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freebsd-ports/biology
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Martin Wilke 9de0881042 Bio::Glite is an interface to G-language Genome Analysis Environment 
through its REST web service (http://www.g-language.org). This module
allows almost everything G-language GAE can do, without installing
all necessary tookits and modules.

Advantage of this module over the standard installation of
G-language GAE package is:
   1. Easy installation from CPAN
   2. Extremely light-weight (less than 1000 lines of code)
   3. Does not require much CPU/RAM (all calculation is done on
the cloud)

Disadvantages includes:
   1. Slower analysis speed
   2. Internet connection is required
   3. No other software interfaces such as the G-language Shell

WWW: http://search.cpan.org/dist/Bio-Glite/

PR:		ports/133273
Submitted by:	Wen Heping <wenheping at gmail.com>
2009-04-02 18:24:59 +00:00
..
adun - update PORTSCOUT 2009-02-15 16:45:58 +00:00
ariadne
artemis Bump portrevision due to upgrade of devel/gettext. 2008-06-06 13:08:29 +00:00
avida bump PORTREVISION after cmake update 2009-03-24 19:13:32 +00:00
babel
belvu
biococoa - add LICENSE: 2009-01-16 16:01:05 +00:00
biojava Reset nemoliu due to maintainer-timeouts and no response to email. 2008-12-08 06:43:50 +00:00
blast - Remove conditional checks relevant only on FreeBSD 5.x and older 2009-01-05 17:27:29 +00:00
blat - Remove USE_GCC where it can be satisfied with base compiler on following 2008-07-25 14:34:52 +00:00
boinc-simap - Remove conditional checks relevant only on FreeBSD 5.x and older 2009-01-05 17:27:29 +00:00
chemeq
clustalw
consed Welcome to the new linux ports infrastructure which allows using 2009-03-19 17:28:51 +00:00
crimap
distribfold
dna-qc
dotter
embassy - Mark BROKEN does not compile 2009-03-23 21:56:39 +00:00
emboss - Update to 0.1.24 2009-03-14 15:17:06 +00:00
fasta - Update download location 2009-01-31 22:45:38 +00:00
fasta3 - Add forgotten patch 2009-02-23 16:13:19 +00:00
fastdnaml
finchtv
fluctuate
garlic
genpak - Remove duplicates from MAKE_ENV after inclusion of CC and CXX in default MAKE_ENV 2008-07-25 09:08:42 +00:00
gff2ps Bump portrevision due to upgrade of devel/gettext. 2008-06-06 13:08:29 +00:00
gmap Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script. 2008-08-21 06:18:49 +00:00
gperiodic Bump portrevision due to upgrade of devel/gettext. 2008-06-06 13:08:29 +00:00
grappa
hmmer - Update download locations, update WWW 2009-02-01 08:17:14 +00:00
jalview Bump portrevision due to upgrade of devel/gettext. 2008-06-06 13:08:29 +00:00
kinemage
L-Breeder Reset dyeske@gmail.com at his request. 2009-02-02 23:44:01 +00:00
lagan - Remove duplicates from MAKE_ENV after inclusion of CC and CXX in default MAKE_ENV 2008-07-25 09:08:42 +00:00
lamarc - Update to 2.1.3 2008-07-31 16:18:42 +00:00
libgenome Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script. 2008-08-21 06:18:49 +00:00
linux-foldingathome
lsysexp Reset dyeske@gmail.com at his request. 2009-02-02 23:44:01 +00:00
mafft - Update download locations, update WWW 2009-02-04 03:31:00 +00:00
mapm3
migrate - Update to 3.0.3 2009-01-14 16:00:34 +00:00
molden - Unbreak distinfo after portrevision bump 2009-01-09 19:31:49 +00:00
mopac Add -lf2c, this is the correct dependency. Bump portrevision. 2008-08-22 22:20:05 +00:00
mrbayes
mummer
muscle
ncbi-toolkit - Update to 2009.03.01 2009-03-28 16:59:39 +00:00
njplot
ortep3 Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3. 2009-01-07 16:34:27 +00:00
p5-AcePerl - Remove conditional checks relevant only on FreeBSD 5.x and older 2009-01-05 17:27:29 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das - update to 1.10 2008-12-11 05:19:12 +00:00
p5-Bio-Glite Bio::Glite is an interface to G-language Genome Analysis Environment 2009-04-02 18:24:59 +00:00
p5-Bio-Graphics - Update to 1.91 2009-03-25 17:38:35 +00:00
p5-Bio-Phylo
p5-bioperl Remove variable PERL_VER from the ports tree at all - because 2009-03-05 17:56:24 +00:00
p5-bioperl-devel - Mark DEPRECATED (no longer under development) 2009-03-19 19:29:34 +00:00
p5-bioperl-run - Update to 1.6.1 2009-03-19 20:54:05 +00:00
p5-bioperl-run-devel - Mark DEPRECATED (no longer under development) 2009-03-19 19:29:34 +00:00
paml - Update to 4.2b 2009-03-02 19:02:48 +00:00
phd2fasta
phrap
phred
phylip - Update X.org ports to 7.4+ (few ports are more recent than the katamari). 2009-01-23 16:28:36 +00:00
platon Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3. 2009-01-07 16:34:27 +00:00
povchem
primer3
protomol - Update X.org ports to 7.4+ (few ports are more recent than the katamari). 2009-01-23 16:28:36 +00:00
psi88 Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3. 2009-01-07 16:34:27 +00:00
py-biopython - Update to 1.48 2008-10-11 15:26:33 +00:00
pymol - Update X.org ports to 7.4+ (few ports are more recent than the katamari). 2009-01-23 16:28:36 +00:00
rasmol
recombine
ruby-bio
seaview
seqio - respect NOPORTEXAMPLES/NOPORTDOCS and fix plist 2008-07-12 06:28:25 +00:00
sim4
ssaha - Fix plist files installation. 2008-06-21 02:46:21 +00:00
t_coffee - Respect PORTDOCS/PORTEXAMPLES 2008-09-09 13:43:15 +00:00
tinker Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3. 2009-01-07 16:34:27 +00:00
treepuzzle Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script. 2008-08-21 06:18:49 +00:00
treeviewx Bump portrevision due to upgrade of devel/gettext. 2008-06-06 13:08:29 +00:00
tRNAscan-SE
wise
xdrawchem Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script. 2008-08-21 06:18:49 +00:00
xmolwt Bump portrevision due to upgrade of devel/gettext. 2008-06-06 13:08:29 +00:00
Makefile Bio::Glite is an interface to G-language Genome Analysis Environment 2009-04-02 18:24:59 +00:00