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TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. Note: TopHat has been Superseded by HISAT2 and is no longer maintained upstream. This port is provided mainly for revisiting old studies where TopHat was used.
30 lines
631 B
Plaintext
30 lines
631 B
Plaintext
bin/bam2fastx
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bin/bam_merge
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bin/bed_to_juncs
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bin/contig_to_chr_coords
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bin/fix_map_ordering
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bin/gtf_juncs
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bin/gtf_to_fasta
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bin/intervaltree/__init__.py
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bin/intervaltree/interval.py
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bin/intervaltree/intervaltree.py
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bin/intervaltree/node.py
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bin/juncs_db
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bin/long_spanning_reads
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bin/map2gtf
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bin/prep_reads
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bin/sam_juncs
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bin/samtools_0.1.18
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bin/segment_juncs
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bin/sortedcontainers/__init__.py
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bin/sortedcontainers/sorteddict.py
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bin/sortedcontainers/sortedlist.py
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bin/sortedcontainers/sortedlistwithkey.py
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bin/sortedcontainers/sortedset.py
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bin/sra_to_solid
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bin/tophat
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bin/tophat-fusion-post
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bin/tophat-test
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bin/tophat2
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bin/tophat_reports
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