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SAM, BAM, and CRAM formats, including indexing, variant calling (in conjunction with bcftools), and a simple alignment viewer. WWW: http://www.htslib.org/ PR: 195592 Submitted by: Reed A. Cartwright <cartwright@asu.edu>
23 lines
648 B
Plaintext
23 lines
648 B
Plaintext
bin/samtools
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bin/samtools_misc/ace2sam
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bin/samtools_misc/blast2sam.pl
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bin/samtools_misc/bowtie2sam.pl
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bin/samtools_misc/export2sam.pl
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bin/samtools_misc/interpolate_sam.pl
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bin/samtools_misc/maq2sam-long
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bin/samtools_misc/maq2sam-short
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bin/samtools_misc/md5fa
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bin/samtools_misc/md5sum-lite
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bin/samtools_misc/novo2sam.pl
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bin/samtools_misc/plot-bamstats
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bin/samtools_misc/psl2sam.pl
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bin/samtools_misc/sam2vcf.pl
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bin/samtools_misc/samtools.pl
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bin/samtools_misc/seq_cache_populate.pl
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bin/samtools_misc/soap2sam.pl
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bin/samtools_misc/varfilter.py
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bin/samtools_misc/wgsim
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bin/samtools_misc/wgsim_eval.pl
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bin/samtools_misc/zoom2sam.pl
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man/man1/samtools.1.gz
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