1
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mirror of https://git.FreeBSD.org/ports.git synced 2024-12-29 05:38:00 +00:00
freebsd-ports/science
2024-04-27 21:01:37 +02:00
..
2d-rewriter *: Move manpages to share/man for imake ports. 2024-02-04 22:13:55 +03:00
abinit science/abinit: Fix tests by adding a workaround for a problem 2024-04-17 00:38:17 -07:00
afni science/afni: update to 24.1.05 2024-04-27 21:01:37 +02:00
agrum science/agrum: update 1.12.1 → 1.13.1 2024-04-21 12:42:25 -07:00
aircraft-datcom
ALPSCore */*: bump PORTREVISION after OpenMPI upgrade 2024-02-18 10:29:31 +01:00
antioch
apbs
arbor
ascent
atompaw
avogadro2 science/avogadro2: update 1.97.0 → 1.99.0 2024-02-12 15:07:36 -08:00
avogadrolibs science/{,py-}avogadrolibs: update 1.97.0 → 1.99.0 2024-02-12 15:07:35 -08:00
axom
bagel devel/boost: bump consumers after library update 2024-02-13 17:44:22 +03:00
bddsolve devel/boost: bump consumers after library update 2024-02-13 17:44:22 +03:00
berkeleygw science/berkeleygw: Broken on powerpc64le 2024-02-05 19:17:59 -08:00
bodr
bout++
bout++-merging-filaments
buddy
cantera
cardioid
cdf
cdk */*: properly depend on Maven package 2024-03-11 10:09:45 +01:00
cdo graphics/proj: Update to 9.4.0 2024-04-15 06:44:23 +02:00
cgnslib
cgribex science/cgribex: Update to 2.0.0 2024-04-10 15:19:33 +08:00
checkmol
chemical-mime-data
chemicalfun
chemps2
chemtool science/chemtool: Move man pages to share/man 2024-03-21 12:34:32 +00:00
chemtool-devel */*: Remove GNU_CONFIGURE_MANPREFIX after move man pages to share/man 2024-04-14 10:41:16 +01:00
chimes-calculator
ChipmunkPhysics
chrono
cif-tools
clhep
clipper
code_saturne science/code_saturne: upgrade to 8.1.1 2024-02-23 17:23:28 +01:00
colt
conduit science/conduit: update 0.8.8 → 0.9.1 2024-04-05 02:15:39 -07:00
coordgenlibs
cp2k
cp2k-data
csvtk all: Bump after lang/go121 update 2024-04-15 08:20:04 +00:00
dakota devel/boost: bump consumers after library update 2024-02-13 17:44:22 +03:00
dalton
dd_package
devisor
dftbplus
dftd3
dftd4 science/{,py-}dftd4: update 3.5.0 → 3.6.0 2024-04-21 15:18:41 -07:00
dimod
dirac science/dirac: Broken on i386 2024-04-27 00:53:00 -07:00
dkh
dlib-cpp
drawxtl
dssp
dvc
dwave-preprocessing
dynare */*: pursue math/matio update 2024-04-22 17:22:24 +03:00
eccodes science/eccodes: Update to 2.35.0 2024-04-13 17:31:34 +08:00
elk science/elk: update 9.5.1 → 9.5.14 2024-04-14 12:07:34 -07:00
elmerfem graphics/tiff: Update to 4.6.0 2024-04-27 14:44:59 +02:00
epte
erd
ergo
erkale
erkale-pseudopotentials
fastcap
fasthenry
fastjet
feff10
fleur
frontistr
fsom
fvcom
fvcom-mpi
gabedit
gamess-us
gbtolib
gchemutils science/gchemutils: Moved man to share/man 2024-02-25 13:54:37 +01:00
gcp
gdma
geant4 devel/onetbb: Update to 2021.12.0 2024-04-17 13:28:34 +02:00
gemmi science/{,py-}gemmi: update 0.6.4 → 0.6.5 2024-02-18 02:07:54 -08:00
getdp science/getdp: Updat to 3.6.0. 2024-03-11 14:32:08 -05:00
ghemical
ghmm
gnudatalanguage graphics/tiff: Update to 4.6.0 2024-04-27 14:44:59 +02:00
gpaw-setups
gramps science/gramps: Update to 5.2.2 2024-04-07 08:47:46 +01:00
grib_api
gromacs science/gromacs: update 2023.2 → 2024.1 2024-03-29 09:06:08 -07:00
gsmc science/gsmc: Moved man to share/man 2024-02-25 13:54:38 +01:00
gtamsanalyzer
h5utils science/h5utils: Drop USES=autoreconf 2024-04-14 13:03:19 +01:00
h5z-zfp
harminv science/harminv: Moved man to share/man 2024-02-25 13:54:40 +01:00
hdf
hdf5 science/hdf5: Update WWW 2024-03-23 22:30:46 +08:00
hdf5-18
hdf5-110
healpix
helfem
hepmc3 science/hepmc3: update 3.2.6 → 3.2.7 2024-04-21 15:17:18 -07:00
highfive science/highfive: update 2.8.0 → 2.9.0 2024-03-11 12:16:48 -07:00
hypre science/hypre: update 2.30.0 → 2.31.0 2024-02-15 03:35:04 -08:00
iboview
InsightToolkit graphics/tiff: Update to 4.6.0 2024-04-27 14:44:59 +02:00
InsightToolkit501 graphics/tiff: Update to 4.6.0 2024-04-27 14:44:59 +02:00
isaac-cfd
jdftx
jmol
jstrack
kalzium KDE: Update KDE Gear to 23.08.5 2024-02-16 20:31:32 +01:00
kim-api
kplib science/kplib: Fix build by removing -Werror promoting a warrning to an error 2024-04-11 01:17:15 -07:00
kst2 graphics/tiff: Update to 4.6.0 2024-04-27 14:44:59 +02:00
lammps graphics/tiff: Update to 4.6.0 2024-04-27 14:44:59 +02:00
lamprop
latte */*: bump PORTREVISION after OpenMPI upgrade 2024-02-18 10:29:31 +01:00
libaec science/libaec: Do not build testing unconditionally 2024-04-06 08:00:10 +08:00
libccp4
libcifpp
libcint science/libcint: update 6.1.0 → 6.1.2 2024-03-14 10:44:06 -07:00
libctl
libecpint
libefp
libgetar
libghemical
libgridxc
libint
libint2 science/libint2: update 2.8.2 → 2.9.0 2024-03-06 11:50:16 -08:00
libint2-psi4
libkml
liblinear
libmbd
libmsym
libnegf
liboglappth
libquantum
libssm
libsvm
libsvm-python
libvdwxc
libxc science/libxc: update 6.0.0 → 6.2.2 2024-04-04 01:05:02 -07:00
liggghts graphics/tiff: Update to 4.6.0 2024-04-27 14:44:59 +02:00
linux-zotero
luscus
m-aneos
madness
maeparser devel/boost: bump consumers after library update 2024-02-13 17:44:22 +03:00
massxpert
mbdyn science/mbdyn: Move man pages to share/man 2024-03-21 12:34:33 +00:00
mcpl
mcstas
mcstas-comps
mctc-lib
mcxtrace science/mcxtrace: Moved man to share/man 2024-02-25 13:54:42 +01:00
mcxtrace-comps
mdynamix
medit
meep
mercantile
metaphysicl
minc2 science/minc2: Moved man to share/man 2024-02-25 13:54:43 +01:00
mmdb2
mmtf-cpp
mol2ps
molgif all: Bump after lang/go121 update 2024-04-15 08:20:04 +00:00
molscript
molsketch
mopac
mp2d
mpb science/mpb: Move man pages to share/man 2024-03-21 12:34:33 +00:00
mpqc science/mpqc: Move manpages to share/man 2024-03-25 21:41:04 +03:00
mrchem
mrcpp
msms
mstore
multicharge
multiwfn
mutationpp
namd
ncrystal
nest science/nest: update 3.5 → 3.7 2024-04-15 21:15:49 -07:00
netcdf */*: Remove GNU_CONFIGURE_MANPREFIX=${PREFIX}/share after 9fd7ee1cdf 2024-04-13 21:03:19 +08:00
netcdf-cxx science/netcdf-cxx: Remove unnecessary substitution 2024-03-23 22:30:46 +08:00
netcdf-fortran science/netcdf-fortran: Update to 4.6.1 2024-04-18 20:48:10 +08:00
nifticlib
nlcglib devel/kokkos: update 4.1.00 → 4.3.00 2024-04-21 11:28:27 -07:00
nwchem */*: clean up after swith to cmake:indirect 2024-04-11 12:27:00 +03:00
nwchem-data science/nwchem-data: update 7.2.0 → 7.2.2 2024-04-12 17:17:24 -07:00
ocean science/ocean: Fix build by adding MAKE_JOBS_UNSAFE 2024-04-07 12:17:13 -07:00
octopus graphics/tiff: Update to 4.6.0 2024-04-27 14:44:59 +02:00
openbabel
openems devel/boost: bump consumers after library update 2024-02-13 17:44:22 +03:00
openkim-models
openmc science/openmc: update 0.13.3 → 0.14.0 2024-04-06 01:34:42 -07:00
openmodelica science/openmodelica: update 1.22.2 → 1.22.3 2024-04-06 07:54:51 -07:00
openmolcas
openmx
opensim-core
opensph devel/onetbb: Update to 2021.12.0 2024-04-17 13:28:34 +02:00
opsin */*: properly depend on Maven package 2024-03-11 10:09:45 +01:00
optench science/optench: new port, a virtual optical bench 2024-02-16 17:37:24 +01:00
orthanc graphics/tiff: Update to 4.6.0 2024-04-27 14:44:59 +02:00
orthanc-dicomweb devel/boost: bump consumers after library update 2024-02-13 17:44:22 +03:00
orthanc-mysql devel/boost: bump consumers after library update 2024-02-13 17:44:22 +03:00
orthanc-postgresql devel/boost: bump consumers after library update 2024-02-13 17:44:22 +03:00
orthanc-webviewer devel/boost: bump consumers after library update 2024-02-13 17:44:22 +03:00
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements science/p5-Chemistry-Elements: update to 1.077 2024-02-11 20:03:13 +01:00
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Calc
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-Coordinates-Transform
p5-Geo-WebService-Elevation-USGS
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
packmol
pagmo2 devel/onetbb: Update to 2021.12.0 2024-04-17 13:28:34 +02:00
paje
paraview graphics/tiff: Update to 4.6.0 2024-04-27 14:44:59 +02:00
pastix
pcmsolver
PETSc science/PETSc: update 3.21.0 → 3.21.1 2024-04-27 00:53:00 -07:00
phonopy science/{,py-}phonopy: update 2.22.0 → 2.22.1 2024-03-29 13:06:56 -07:00
plumed
pnetcdf */*: Remove GNU_CONFIGURE_MANPREFIX=${PREFIX}/share after 9fd7ee1cdf 2024-04-13 21:03:19 +08:00
polytope
precice devel/boost: bump consumers after library update 2024-02-13 17:44:22 +03:00
psi4 science/psi4: update 1.9 → 1.9.1 2024-04-04 01:05:04 -07:00
pulseview
py-abipy
py-access
py-arbor
py-arch devel/py-setuptools-scm: update to 8.0.4 2024-02-29 02:18:32 -05:00
py-asap3
py-asdf science/py-asdf: Convert to USE_PYTHON=pytest 2024-04-09 04:17:28 +08:00
py-asdf-standard science/py-asdf-standard: Update to 1.1.1 2024-03-23 22:49:29 +08:00
py-asdf-transform-schemas science/py-asdf-transform-schemas: Update to 0.5.0 2024-03-23 22:49:30 +08:00
py-ase
py-atomium
py-avogadrolibs science/{,py-}avogadrolibs: update 1.97.0 → 1.99.0 2024-02-12 15:07:35 -08:00
py-boutdata devel/py-setuptools-scm: update to 8.0.4 2024-02-29 02:18:32 -05:00
py-boututils devel/py-setuptools-scm: update to 8.0.4 2024-02-29 02:18:32 -05:00
py-cdo
py-cfgrib science/py-cfgrib: Update to 0.9.11.0 2024-04-08 14:46:53 +08:00
py-chainer
py-chainer-chemistry
py-chempy science/py-chempy: update 0.8.3 → 0.9.0 2024-04-25 07:52:09 -07:00
py-cirq-aqt
py-cirq-core
py-cirq-google
py-cirq-ionq
py-cirq-pasqal
py-cirq-rigetti
py-coards
py-DendroPy
py-dftbplus
py-dftd4 science/{,py-}dftd4: update 3.5.0 → 3.6.0 2024-04-21 15:18:41 -07:00
py-dimod
py-dipy science/py-dipy: update 1.8.0 → 1.9.0 2024-04-22 01:25:11 -07:00
py-dlib */*: convert to cmake:indirect 2024-04-11 12:16:53 +03:00
py-dwave-cloud-client devel/py-python-dateutil: Move devel/py-dateutil to devel/py-python-dateutil 2024-04-13 22:47:51 +08:00
py-dwave-greedy
py-dwave-hybrid science/py-dwave-hybrid: update 0.6.10 → 0.6.11 2024-03-04 15:19:09 -08:00
py-dwave-inspector
py-dwave-neal
py-dwave-networkx
py-dwave-ocean-sdk science/py-dwave-ocean-sdk: update 6.8.0 → 6.9.0 2024-03-04 15:19:10 -08:00
py-dwave-preprocessing
py-dwave-samplers
py-dwave-system
py-dwave-tabu
py-dwavebinarycsp
py-earthpy
py-eccodes science/py-eccodes: Update to 1.7.0 2024-03-09 22:06:14 +08:00
py-emmet-core science/py-emmet-core: Add NO_ARCH 2024-03-10 03:10:04 +08:00
py-esda devel/py-setuptools-scm: update to 8.0.4 2024-02-29 02:18:32 -05:00
py-fresnel devel/onetbb: Update to 2021.12.0 2024-04-17 13:28:34 +02:00
py-gemmi science/{,py-}gemmi: update 0.6.4 → 0.6.5 2024-02-18 02:07:54 -08:00
py-geolinks
py-geomet
py-geometer
py-geometric
py-gpaw
py-GPy
py-GPyOpt
py-gsd
py-h5json
py-h5py science/py-h5py: Update to 3.11.0 2024-04-13 17:31:41 +08:00
py-h5pyd science/py-h5pyd: New port: h5py compatible client lib for HDF REST API 2024-04-07 11:37:59 -07:00
py-HepMC3
py-hiphive
py-HofstadterTools science/py-HofstadterTools: New port: Package for analyzing the Hofstadter model of particles in the lattice 2024-04-19 12:28:24 -07:00
py-hoomd-blue devel/onetbb: Update to 2021.12.0 2024-04-17 13:28:34 +02:00
py-inequality devel/py-setuptools-scm: update to 8.0.4 2024-02-29 02:18:32 -05:00
py-ipygany
py-jupyter_jsmol science/py-jupyter_jsmol: Convert to USE_PYTHON=pytest 2024-03-09 23:21:42 +08:00
py-kim-query
py-kimpy
py-kinematics
py-kliff
py-kpLib devel/py-setuptools-scm: update to 8.0.4 2024-02-29 02:18:32 -05:00
py-liac-arff
py-libgetar
py-libpysal
py-lifelines
py-MDAnalysis
py-MDAnalysisTests
py-mdp
py-meshio science/py-meshio: Convert to USE_PYTHON=pytest 2024-03-09 23:21:44 +08:00
py-mmcif
py-mmtf-python
py-molmod
py-moltemplate science/py-moltemplate: update 2.20.20 → 2.20.21 2024-02-11 23:56:24 -08:00
py-mp-api science/py-mp-api: Add NO_ARCH 2024-03-10 03:10:05 +08:00
py-mpcontribs-client devel/py-setuptools-scm: update to 8.0.4 2024-02-29 02:18:32 -05:00
py-mrchem
py-ncrystal
py-netCDF4
py-netcdf-flattener
py-nglview science/py-nglview: update 3.0.7 → 3.1.2 2024-04-20 01:34:04 -07:00
py-nibabel science/py-nibabel: update 5.2.0 → 5.2.1 2024-04-14 12:07:37 -07:00
py-nilearn
py-obspy
py-oddt
py-openbabel
py-OpenFermion science/py-OpenFermion: update 1.6.0 → 1.6.1 2024-04-27 00:52:59 -07:00
py-OpenFermion-Dirac
py-OpenFermion-PySCF
py-OpenMC science/py-OpenMC: update 0.13.3 → 0.14.0 2024-04-06 01:34:42 -07:00
py-openpiv
py-optking
py-paida
py-paramz
py-penaltymodel
py-phono3py
py-phonopy science/{,py-}phonopy: update 2.22.0 → 2.22.1 2024-03-29 13:06:56 -07:00
py-PubChemPy
py-pupynere
py-py3Dmol science/py-py3Dmol: update 2.0.3 → 2.1.0 2024-03-12 23:17:02 -07:00
py-pyaixi
py-pyberny
py-pycsw
py-pydicom
py-PyFR
py-pygeodesy
py-pygeometa
py-pygmo2 science/py-pygmo2: update 2.19.5 → 2.19.6 2024-02-22 01:38:41 -08:00
py-pyked
py-pymatgen science/py-pymatgen: Convert to USE_PYTHON=pytest 2024-03-09 23:21:48 +08:00
py-pymatgen-analysis-alloys
py-pymbd
py-pymol
py-PyNE
py-pyosf
py-pyprecice
py-pyqubo
py-pysal
py-pyscf science/py-pyscf: update 2.4.0 → 2.5.0 2024-02-06 09:33:31 -08:00
py-pyteomics science/py-pyteomics: Convert to USE_PYTHON=pep517 2024-03-09 22:06:14 +08:00
py-qcelemental
py-qcengine
py-qspin
py-quantities
py-rmf
py-rmsd
py-ruffus
py-scikit-fuzzy
py-scikit-learn
py-scikit-optimize science/py-scikit-optimize: Update to 0.10.1 2024-03-23 22:49:30 +08:00
py-scikit-sparse
py-scimath
py-scipy
py-scoria
py-sdf
py-segregation science/py-segregation: Remove PY_SETUPTOOLS 2024-04-08 14:46:54 +08:00
py-segyio science/{,py-}segyio: update 1.9.11 → 1.9.12 2024-04-08 00:31:00 -07:00
py-signac science/py-signac: update 2.1.0 → 2.2.0 2024-02-16 10:08:31 -08:00
py-SimpleSpectral
py-sklearn-pandas
py-skrebate
py-spaghetti science/py-spaghetti: Remove PY_SETUPTOOLS 2024-04-08 14:46:56 +08:00
py-spglib science/{,py-}spglib: update 2.3.1 → 2.4.0 2024-04-11 21:33:44 -07:00
py-tensorflow science/py-tensorflow: Mark BROKEN 2024-02-17 07:05:56 +01:00
py-thewalrus
py-tobler
py-trainstation
py-trx-python devel/py-setuptools-scm: update to 8.0.4 2024-02-29 02:18:32 -05:00
py-tweedledum science/py-tweedledum: Force GCC 12 when GCC is needed 2024-02-21 20:42:35 +00:00
py-vedo
py-veusz
py-xbout devel/py-setuptools-scm: update to 8.0.4 2024-02-29 02:18:32 -05:00
pybrain
pynn science/pynn: Update to 0.12.2 2024-02-23 12:05:11 +00:00
q
qbox science/qbox: update 1_76_3 → 1_76_4 2024-03-22 05:22:54 -07:00
qcl
qiskit-aer
qmcpack
qt6-quick3dphysics science/qt6-quick3dphysics: Fix plist 2024-04-02 22:38:11 +02:00
quantum-espresso science/quantum-espresso: Remove wannier90 binaries, which fixes conflict for science/ocean 2024-04-11 20:01:49 -07:00
quantum-espresso-pseudopotentials science/quantum-espresso-pseudopotentials: update g20180406 → g20220916 2024-03-16 01:05:36 -07:00
quantum-jet
qwalk
R-cran-bayesm
R-cran-cmprsk
R-cran-DCluster science/R-cran-DCluster: Update to 0.2-10 2024-02-07 13:03:02 +00:00
R-cran-e1071
R-cran-eco
R-cran-Epi science/R-cran-Epi: Update to 2.48 2024-04-03 22:07:10 +00:00
R-cran-epicalc
R-cran-etm
R-cran-FAdist
R-cran-fastICA
R-cran-kernlab
R-cran-ks
R-cran-snow
R-cran-som
R-cran-udunits2
rdkit science/rdkit: Clang-17 crashes on FreeBSD 15 amd64 2024-03-17 01:21:51 -07:00
rmf devel/boost: bump consumers after library update 2024-02-13 17:44:22 +03:00
rubygem-ai4r
rubygem-cdo
rubygem-rgeo
rubygem-rgeo-geojson
rubygem-rgeo-proj4 graphics/proj: Update to 9.4.0 2024-04-15 06:44:23 +02:00
rubygem-rgeo-shapefile
rubygem-ruby-netcdf
salome-configuration */*: Replace format=bsdtar with format=ustar in tar archive operations 2024-02-18 17:48:08 -08:00
salome-kernel */*: Replace format=bsdtar with format=ustar in tar archive operations 2024-02-18 17:48:08 -08:00
scidavis
sciplot
segyio science/{,py-}segyio: update 1.9.11 → 1.9.12 2024-04-08 00:31:00 -07:00
serac
shelxle science/shelxle: update 1.0.1636 → 1.0.1638 2024-04-25 23:15:15 -07:00
siconos
siesta
sigrok-cli science/sigrok-cli: Moved man to share/man 2024-02-22 14:23:39 +01:00
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo
simbody
simgrid devel/boost: bump consumers after library update 2024-02-13 17:44:22 +03:00
simint
simlib
simple-dftd3
simsmith
sirius
smoldyn graphics/tiff: Update to 4.6.0 2024-04-27 14:44:59 +02:00
sparta */*: bump PORTREVISION after OpenMPI upgrade 2024-02-18 10:29:31 +01:00
spglib science/{,py-}spglib: update 2.3.1 → 2.4.0 2024-04-11 21:33:44 -07:00
spheral science/spheral: update 2024.01.0 → 2024.01.1 2024-04-08 09:57:53 -07:00
step */*: Chase update of math/libqalculate 2024-03-28 17:16:58 -04:00
tblite
teem
tfel
tfel-edf
thermofun science/thermofun: update 0.4.4 → 0.4.5 2024-04-27 00:52:59 -07:00
tinker science/tinker: update 8.10.5 → 8.11.1 2024-04-14 12:07:35 -07:00
trilinos science/trilinos: Fix build on 13 and maybe other systems 2024-04-04 14:43:35 -07:00
ttk science/ttk: Attempt to fix build by adding the searched depency package fast_float 2024-04-08 12:18:41 -07:00
tweedledum
udunits
ukrmol+
v_sim science/v_sim: move man pages 2024-02-23 17:23:08 +01:00
vipster
vmd
voro++ science/voro++: Move man pages to share/man 2024-03-21 17:10:16 +00:00
votca science/votca: update 2023 → 2024 2024-03-29 09:06:09 -07:00
wannier90
wwplot science/wwplot: update 0.0.9 → 1.0.0 2024-04-19 12:28:22 -07:00
wxmacmolplt science/wxmacmolplt: Move man pages to share/man 2024-03-21 17:10:16 +00:00
xcfun
xcrysden
xdrawchem
xtb
yoda
zotero science/zotero: Update to 6.0.36 2024-03-18 10:21:38 +01:00
zx
Makefile science/py-HofstadterTools: New port: Package for analyzing the Hofstadter model of particles in the lattice 2024-04-19 12:28:24 -07:00