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51d04637cb
Usage:
USES=eigen:<version>[,<type>]
version: 2 or 3 (required)
type: build (default), run
For example:
USES=eigen:2,build,run
will add a BUILD- and RUN_DEPENDS on math/eigen2, and
USES=eigen:3
will add a BUILD_DEPENDS on math/eigen3.
* Convert the existing ports to use it
- biology/iqtree: remove run time dependency (seemed not to be needed)
- graphics/movit: remove run time dependency (seemed not to be needed)
- science/avogadro: add run time dependeny (installed cmake file requires it to be present)
Reviewed by: rakuco, mat
Differential Revision: https://reviews.freebsd.org/D13702
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| .. | ||
| ariadne | ||
| artemis | ||
| avida | ||
| babel | ||
| bcftools | ||
| bedtools | ||
| biococoa | ||
| blat | ||
| bowtie | ||
| bowtie2 | ||
| bwa | ||
| canu | ||
| cd-hit | ||
| cdbfasta | ||
| chemeq | ||
| clustalw | ||
| consed | ||
| crux | ||
| diamond | ||
| emboss | ||
| fasta | ||
| fasta3 | ||
| fastdnaml | ||
| fastool | ||
| fastqc | ||
| fasttree | ||
| fastx-toolkit | ||
| fluctuate | ||
| garlic | ||
| gff2ps | ||
| gmap | ||
| gperiodic | ||
| grappa | ||
| hmmer | ||
| htslib | ||
| iolib | ||
| iqtree | ||
| jalview | ||
| jellyfish | ||
| kallisto | ||
| lagan | ||
| lamarc | ||
| libgtextutils | ||
| libsbml | ||
| linux-foldingathome | ||
| mafft | ||
| mapm3 | ||
| migrate | ||
| molden | ||
| mopac | ||
| mrbayes | ||
| mummer | ||
| muscle | ||
| ncbi-blast+ | ||
| ncbi-toolkit | ||
| njplot | ||
| p5-AcePerl | ||
| p5-Bio-ASN1-EntrezGene | ||
| p5-Bio-Coordinate | ||
| p5-Bio-Das | ||
| p5-Bio-Das-Lite | ||
| p5-Bio-FeatureIO | ||
| p5-Bio-GFF3 | ||
| p5-Bio-Glite | ||
| p5-Bio-Graphics | ||
| p5-Bio-MAGETAB | ||
| p5-Bio-NEXUS | ||
| p5-Bio-Phylo | ||
| p5-Bio-SCF | ||
| p5-BioPerl | ||
| p5-BioPerl-Run | ||
| p5-transdecoder | ||
| p5-TrimGalore | ||
| paml | ||
| phrap | ||
| phred | ||
| phylip | ||
| phyml | ||
| plink | ||
| plinkseq | ||
| primer3 | ||
| protomol | ||
| psi88 | ||
| py-biom-format | ||
| py-biopython | ||
| py-bx-python | ||
| py-cutadapt | ||
| py-macs2 | ||
| py-pysam | ||
| pycogent | ||
| pyfasta | ||
| python-nexus | ||
| recombine | ||
| ruby-bio | ||
| rubygem-bio | ||
| samtools | ||
| seaview | ||
| seqan | ||
| seqan1 | ||
| seqan-apps | ||
| seqio | ||
| seqtools | ||
| sim4 | ||
| slclust | ||
| ssaha | ||
| t_coffee | ||
| tinker | ||
| treepuzzle | ||
| trimmomatic | ||
| tRNAscan-SE | ||
| ugene | ||
| vcftools | ||
| velvet | ||
| wise | ||
| xmolwt | ||
| Makefile | ||