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46 lines
1.7 KiB
Makefile
46 lines
1.7 KiB
Makefile
PORTNAME= freebayes
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DISTVERSIONPREFIX= v
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DISTVERSION= 1.3.6
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PORTREVISION= 2
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CATEGORIES= biology
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= Bayesian haplotype-based polymorphism discovery and genotyping
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WWW= https://github.com/ekg/freebayes
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LICENSE= MIT
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LIB_DEPENDS= libhts.so:biology/htslib
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# Submodules use older versions than the ports, so we cannot safely unbundle
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# No shared libs are built by the submodules so there will be no conflicts
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# Yes, there are actually 2 versions of intervaltree required
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USES= compiler:c++14-lang localbase meson perl5 pkgconfig
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USE_GITHUB= yes
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GH_ACCOUNT= ekg
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GH_TUPLE= ekg:intervaltree:b90527f:intervaltree/vcflib/intervaltree \
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ekg:vcflib:d4073c3:vcflib/vcflib-temp \
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ekg:fastahack:bb33265:fastahack/vcflib/fastahack \
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ekg:filevercmp:1a9b779:filevercmp/vcflib/filevercmp \
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ekg:fsom:a6ef318:fsom/vcflib/fsom \
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google:googletest:d225acc:googletest/vcflib/googletest \
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ekg:intervaltree:17ddd57:intervaltree/vcflib/intervaltree \
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edawson:libVCFH:615a06b:libVCFH/vcflib/libVCFH \
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ekg:multichoose:68733cd:multichoose/vcflib/multichoose \
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ekg:smithwaterman:2610e25:smithwaterman/vcflib/smithwaterman \
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ekg:tabixpp:b255df1:tabixpp/vcflib/tabixpp \
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simd-everywhere:simde-no-tests:2931676:simd/vcflib/src/simde \
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ingydotnet:test-simple-bash:124673f:testsimplebash/test/test-simple-bash \
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illusori:bash-tap:c38fbfa:bashtap/test/bash-tap
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USE_PERL5= build
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LDFLAGS+= -lexecinfo
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PLIST_FILES= bin/bamleftalign bin/freebayes
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# GH_TUPLEs cannot seem to share a top-level subdirectory, so we work around
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# by dumping the parent in a temp directory and then moving the contents
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post-extract:
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${CP} -r ${WRKSRC}/vcflib-temp/* ${WRKSRC}/vcflib
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.include <bsd.port.mk>
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