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162 lines
4.8 KiB
Makefile
162 lines
4.8 KiB
Makefile
# $FreeBSD$
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############################################################################
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# http://www.neuro.mcw.edu/Ports has the latest source distribution from
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# which this port is built. It will be updated as time permits.
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#
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# afni.nimh.nih.gov is the ultimate source for AFNI, and will always
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# contain the latest source release. If this port is not up to date,
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# you can download the latest sources and build manually.
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PORTNAME= afni
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PORTVERSION= 2015.11.13
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PORTREVISION= 7
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CATEGORIES= science biology graphics
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MASTER_SITES= http://www.acadix.biz/Ports/distfiles/
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= Advanced Functional Neuro Imaging
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LICENSE= GPLv2
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BUILD_DEPENDS= gm4:devel/m4
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LIB_DEPENDS= libexpat.so:textproc/expat2 \
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libf2c.so:lang/f2c \
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libR.so:math/R \
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libgsl.so:math/gsl \
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libnetcdff.so:science/netcdf-fortran \
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libxml2.so:textproc/libxml2 \
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libXm.so:x11-toolkits/open-motif
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RUN_DEPENDS= endian:sysutils/endian \
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mpeg_encode:multimedia/mpeg_encode \
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ppmtogif:graphics/netpbm \
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qhull:math/qhull5
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BROKEN_aarch64= fails to compile: suma_utils.c:3043:10: statement requires expression of scalar type
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BROKEN_sparc64= fails to compile: undefined reference to '_mcount'
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CONFLICTS= im-[0-9]* \
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nifticlib-[0-9]* \
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open-usp-tukubai-[0-9]*
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USES= gettext gmake iconv jpeg:run motif perl5 python shebangfix tar:xz
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SHEBANG_FILES= suma_change_spec \
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3dPAR2AFNI.pl \
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python_scripts/*.py \
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pkundu/meica.py \
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pkundu/meica.libs/*.py \
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pkundu/meica.libs/mdp/test/run_tests.py
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USE_GNOME= glib20
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.include <bsd.port.options.mk>
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USE_GL= gl glu glw
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USE_XORG= x11 xext xi xmu xp xt
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MAKE_ENV= CC="${CC}" R_SHARE_DIR=${LOCALBASE}/lib/R/share
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MAKE_JOBS_UNSAFE=yes
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ALL_TARGET= vastness suma
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###########################################################################
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# Install parameters
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SUB_FILES= pkg-message afni.cshrc afni.profile
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INSTALL_WRKSRC= ${WRKSRC}/BSD
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PRESTAGE= ${WRKSRC}/prestage
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X11R6_FILES= coxplot/Makefile \
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coxplot/Makefile.f2c \
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3DEdge/src/Makefile \
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SUMA/SUMA_Makefile \
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edt_blur.c \
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suma_datasets.c \
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SUMA/SUMA_Load_Surface_Object.c \
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SUMA/SUMA_MiscFunc.c \
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SUMA/SUMA_ParseCommands.c \
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SUMA/GLUT/libglut/glut_event.c \
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SUMA/SUMA_Surface_IO.c
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post-extract:
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.for f in ${X11R6_FILES}
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@${REINPLACE_CMD} \
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-e 's|/usr/X11R6|$${LOCALBASE}|g' ${WRKSRC}/${f}
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.endfor
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@${REINPLACE_CMD} \
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-E 's|AFNI_[0-9_]+|${PORTVERSION}|g' ${WRKSRC}/AFNI_label.h
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@${REINPLACE_CMD} \
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-e "s|%%PREFIX%%|${PREFIX}|g" ${WRKSRC}/afni.1
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@${CP} ${FILESDIR}/Makefile ${WRKSRC}
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@${RM} ${WRKSRC}/3DEdge/src/Makefile.orig
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# shebangfix misses /bin/python on 10.1
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post-patch:
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${REINPLACE_CMD} -e "s|-lglib|-lglib-2.0|g" \
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${WRKSRC}/SUMA/SUMA_Makefile
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${REINPLACE_CMD} -e "s|/bin/python|${PYTHON_CMD}|g" \
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${WRKSRC}/python_scripts/lib_fat_Rfactor.py
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${REINPLACE_CMD} \
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-e 's|os\.path\.dirname(sys\.argv\[0\])|"${PREFIX}/libexec"|g' \
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${WRKSRC}/pkundu/meica.py
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${REINPLACE_CMD} \
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-e 's|g_info|afni_g_info|g' \
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${WRKSRC}/rickr/Dimon.c \
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${WRKSRC}/rickr/Dimon1.c \
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${WRKSRC}/afni_history_rickr.c \
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${WRKSRC}/mri_dicom_stuff.c \
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${WRKSRC}/mri_process_siemens.c \
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${WRKSRC}/mri_read_dicom.c \
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${WRKSRC}/to3d.c \
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${WRKSRC}/mri_dicom_stuff.h
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post-build:
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${MKDIR} ${PRESTAGE}/bin \
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${PRESTAGE}/scripts \
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${PRESTAGE}/lib \
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${PRESTAGE}/include \
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${PRESTAGE}/trash \
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${PRESTAGE}/doc \
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${PRESTAGE}/share
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${MV} ${INSTALL_WRKSRC}/libf2c.a \
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${PRESTAGE}/trash
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${MV} ${INSTALL_WRKSRC}/*.a \
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${INSTALL_WRKSRC}/*.so \
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${PRESTAGE}/lib
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${MV} ${INSTALL_WRKSRC}/funstuff \
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${INSTALL_WRKSRC}/AFNI.*rc \
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${INSTALL_WRKSRC}/afnigui* \
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${PRESTAGE}/share
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${MV} ${INSTALL_WRKSRC}/*.h \
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${PRESTAGE}/include
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${MV} ${INSTALL_WRKSRC}/README* \
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${PRESTAGE}/doc
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for binary in `${FILE} ${INSTALL_WRKSRC}/* | fgrep 'ELF' | ${AWK} -F ':' ' { print $$1 }'` ; do \
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${MV} $${binary} ${PRESTAGE}/bin ; \
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done
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${MV} ${INSTALL_WRKSRC}/* \
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${PRESTAGE}/scripts
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${MV} ${PRESTAGE}/scripts/meica.libs ${PRESTAGE}
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do-install:
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${MKDIR} ${STAGEDIR}${DATADIR} \
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${STAGEDIR}${PREFIX}/lib/afni \
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${STAGEDIR}${PREFIX}/include/afni
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for f in ${PRESTAGE}/lib/*; do \
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${STRIP_CMD} $${f}; \
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done
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${INSTALL_DATA} ${PRESTAGE}/lib/* ${STAGEDIR}${PREFIX}/lib/afni
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${INSTALL_DATA} ${PRESTAGE}/include/* ${STAGEDIR}${PREFIX}/include/afni
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cd ${PRESTAGE}/share && ${COPYTREE_SHARE} . ${STAGEDIR}${DATADIR}
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${INSTALL_PROGRAM} ${PRESTAGE}/bin/* ${STAGEDIR}${PREFIX}/bin
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${INSTALL_SCRIPT} ${PRESTAGE}/scripts/* ${STAGEDIR}${PREFIX}/bin
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cd ${PRESTAGE} && ${COPYTREE_BIN} meica.libs \
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${STAGEDIR}${PREFIX}/libexec
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${INSTALL_DATA} ${WRKSRC}/Atlases/* ${STAGEDIR}${DATADIR}
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${INSTALL_MAN} ${WRKSRC}/afni.1 ${STAGEDIR}${MAN1PREFIX}/man/man1
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${MKDIR} ${STAGEDIR}${DOCSDIR} ${STAGEDIR}${PREFIX}/etc/mri
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${INSTALL_DATA} ${PRESTAGE}/doc/* ${STAGEDIR}${DOCSDIR}
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${INSTALL_SCRIPT} ${WRKDIR}/afni.cshrc ${WRKDIR}/afni.profile \
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${STAGEDIR}${PREFIX}/etc/mri
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.include <bsd.port.mk>
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