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702ce22305
sequences. It stands for Sequence Search and Alignment by Hashing Algorithm. It achieves its fast search speed by converting sequence information into a `hash table' data structure, which can then be searched very rapidly for matches. WWW: http://www.sanger.ac.uk/Software/analysis/SSAHA/ PR: ports/124525 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> Approved by: gabor (mentor, implicit)
17 lines
664 B
C
17 lines
664 B
C
--- ./HashTable/HashTablePacked.h.orig 2004-03-01 13:51:29.000000000 -0300
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+++ ./HashTable/HashTablePacked.h 2008-06-12 15:39:31.000000000 -0300
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@@ -236,11 +236,11 @@
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HashTableView<PositionPacked,HashTablePacked>
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(monitoringStream, name, hitListAllocator, arrayAllocator),
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wordNum_(0),
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+ numRepeats_(0),
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+ substituteThreshold_(0),
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pMatchSequence_(&HashTablePacked::matchSequenceStandard),
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pMatchWord_(&HashTablePacked::matchWordStandard),
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pGenerateSubstitutes_(&generateSubstitutesDNA),
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- numRepeats_(0),
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- substituteThreshold_(0),
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sorter_(4,(sizeof(PositionPacked)*8)/4)
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{
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hitListFormat_ = g32BitPacked;
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