Antoine Brodin 4cf302d6b0 Fix some PORT_OPTIONS conversions

2013-06-30 20:53:06 +00:00

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adun

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ariadne

. NOPORTDOCS -> PORT_OPTIONS:MDOCS;

2013-06-19 14:10:02 +00:00

artemis

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avida

- Fix build with clang

2013-06-04 08:26:03 +00:00

babel

. NOPORTDOCS -> PORT_OPTIONS:MDOCS;

2013-06-19 19:01:47 +00:00

biococoa

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biojava

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blast

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blat

. remove pkg-plist (along with the previous commit).

2013-06-19 18:44:32 +00:00

boinc-simap

Use bsd.port.options.mk instead of bsd.port.{pre|post}.mk

2013-04-29 12:20:35 +00:00

chemeq

. NOPORTDOCS -> PORT_OPTIONS:MDOCS;

2013-06-19 20:01:30 +00:00

clustalw

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consed

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crux

- adoption of optionsNG

2013-03-18 06:48:55 +00:00

dotter

- Mark broken checksum mismatch

2013-03-25 01:41:31 +00:00

embassy

- Convert USE_ICONV=yes to USES=iconv

2013-04-27 08:50:46 +00:00

emboss

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fasta

Fix some PORT_OPTIONS conversions

2013-06-30 20:53:06 +00:00

fasta3

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fastdnaml

. NOPORTDOCS -> PORT_OPTIONS:MDOCS;

2013-06-19 13:35:55 +00:00

finchtv

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fluctuate

. NOPORTDOCS -> PORT_OPTIONS:MDOCS;

2013-06-19 12:43:28 +00:00

garlic

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genpak

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gff2ps

. NOPORTDOCS -> PORT_OPTIONS:MDOCS;

2013-06-19 18:56:37 +00:00

gmap

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gperiodic

. NOPORTDOCS -> PORT_OPTIONS:MDOCS;

2013-06-19 19:05:47 +00:00

grappa

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hmmer

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iolib

- Update to 1.13.0

2013-04-30 15:41:49 +00:00

jalview

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lagan

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lamarc

. trim Makefile headers;

2013-06-19 15:39:18 +00:00

libgenome

. add license (GPLv2);

2013-06-19 18:53:54 +00:00

libsbml

- adoption of optionsNG

2013-03-18 06:50:12 +00:00

linux-foldingathome

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mafft

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mapm3

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migrate

- Update to 3.5.1

2013-05-26 07:49:47 +00:00

molden

- Update to 5.0.6

2013-04-26 06:57:37 +00:00

mopac

. NOPORTEXAMPLES -> PORT_OPTIONS:MEXAMPLES;

2013-06-19 18:38:46 +00:00

mrbayes

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mummer

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muscle

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ncbi-toolkit

- Update to 2012.06.20

2013-03-14 05:27:58 +00:00

njplot

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ortep3

. introdice optionsNG to the port;

2013-06-19 20:06:59 +00:00

p5-AcePerl

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p5-Bio-ASN1-EntrezGene

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p5-Bio-Das

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p5-Bio-Das-Lite

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p5-Bio-GFF3

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p5-Bio-Glite

For perl@ owned ports:

2013-03-29 00:44:53 +00:00

p5-Bio-Graphics

Add missing item to pkg-plist reported by QAT but not reported by poudriere.

2013-03-03 15:22:43 +00:00

p5-Bio-MAGETAB

For perl@ owned ports:

2013-03-29 00:44:53 +00:00

p5-Bio-NEXUS

For perl@ owned ports:

2013-03-29 00:44:53 +00:00

p5-Bio-Phylo

- Update to 0.52 [1]

2013-02-16 14:58:51 +00:00

p5-Bio-SCF

- Trim Makefile headers

2013-06-01 14:22:35 +00:00

p5-bioperl

- Avoid of using SITE_PERL

2013-06-07 06:51:42 +00:00

p5-bioperl-run

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paml

- Trim Makefile headers

2013-06-01 14:22:35 +00:00

phd2fasta

Remove unneeded escaping

2013-04-26 16:23:13 +00:00

phrap

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phred

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phylip

Fix some screw ups introduced in r319847.

2013-06-24 18:09:52 +00:00

phyml

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platon

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plink

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plinkseq

Fix build with protobuf-2.5.0

2013-03-21 14:09:22 +00:00

povchem

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primer3

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protomol

- adoption of optionsNG

2013-03-18 06:54:39 +00:00

psi88

. NOPORTDOCS -> PORT_OPTIONS:MDOCS;

2013-06-19 19:54:13 +00:00

py-biopython

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pycogent

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pyfasta

- Trim Makefile headers

2013-06-01 14:22:35 +00:00

pymol

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python-nexus

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rasmol

Convert to USES=imake

2013-06-28 18:32:25 +00:00

recombine

. NOPORTDOCS -> PORT_OPTIONS:MDOCS;

2013-06-19 19:15:14 +00:00

ruby-bio

- adoption of optionsNG

2013-03-18 06:55:42 +00:00

seaview

- Update to 4.4.1

2013-03-26 01:08:40 +00:00

seqan

- convert USE_CMAKE to USES

2013-03-22 20:06:14 +00:00

seqio

Remove stale (since r321246) pkg-plist file.

2013-06-19 21:04:36 +00:00

sim4

. add license (GPLv2);

2013-06-19 16:36:53 +00:00

ssaha

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t_coffee

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tinker

- Update to 6.2.05

2013-05-29 05:25:49 +00:00

treepuzzle

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treeviewx

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tRNAscan-SE

. NOPORTDOCS -> PORT_OPTIONS:MDOCS;

2013-06-19 19:20:25 +00:00

ugene

Unbreak on 7.X and i386 systems.

2013-02-25 13:00:15 +00:00

velvet

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wise

Fix build by adding an explicit dep on pkgconf

2013-05-03 20:48:34 +00:00

xdrawchem

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xmolwt

Use optionsNG for DOCS.

2013-06-19 19:07:35 +00:00

Makefile

Add Unipro UGENE, a free open-source crowss-platform bioinformatics software.

2013-02-23 04:50:48 +00:00