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freebsd-ports/science
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Raphael Kubo da Costa 554e0c79c9 Update the KDE Software Compilation to 4.10.5. 
Proudly brought to you by the KDE on FreeBSD team. We're sorry to ship two
KDE updates in just a few days, but the work on 4.10.5 was very light
compared to 4.10.4 so it was ready much faster.

The release announcement can be found in [1].
[1] http://www.kde.org/announcements/announce-4.10.5.php

The biggest news for us on FreeBSD is that the Ruby bindings should work
with Ruby 1.9 now.

I will probably add a note to UPDATING later about this, but as avilla@
pointed out, the clang support we mentioned that was improved in 4.10.4
requires a rebuild of the ports that depend on kdelibs4. Most of them are
covered by this update, but those which are not part of the Software
Compilation need to be rebuilt manually to make sure the previous issues
(proper symbol visibility being the most annoying of them) are solved.
2013-07-04 23:34:32 +00:00
..
2d-rewriter Convert to USES=imake 2013-06-28 22:25:57 +00:00
2dhf
abinit Rectify USE_TEX to support both of teTeX and TeXLive. 2013-05-11 17:58:55 +00:00
afni Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
avogadro - Backout previous commit 2013-05-15 05:16:51 +00:00
bddsolve
bft
bodr
brian
buddy
cdcl
cdf
cdo - Update to 1.6.0 2013-06-08 21:49:40 +00:00
cgnslib - Fix build with Tcl/Tk 8.6 2013-06-04 09:33:05 +00:00
checkmol - worked with upstream to roll versioned source distfile 2013-06-01 05:10:39 +00:00
chemical-mime-data
chemtool
chemtool-devel - Convert USE_GETTEXT to USES (part 3) 2013-04-24 18:10:30 +00:00
clhep
colt
crf++
dcl
devisor Convert NOPORTDOCS -> PORT_OPTIONS:MDOCS. 2013-06-20 13:59:24 +00:00
dlpoly-classic Convert science to new options framework 2013-04-28 22:08:22 +00:00
dtiquery
ecs WITHOUT_NLS -> PORT_OPTIONS:MNLS 2013-06-04 14:40:29 +00:00
elmer-eio
elmer-hutiter
elmer-matc
elmer-meshgen2d
elmergrid
elmerpost
epte
euler Fix spelling LICENCE -> LICENSE. 2013-06-13 15:30:22 +00:00
fastcap
fasthenry update to 3.0wr-021113 2013-03-28 01:06:02 +00:00
felt . trim Makefile headers; 2013-06-20 12:46:30 +00:00
flounder
fvcom
fvcom-mpi
fvm Chase french/med upgrade. 2013-03-19 20:35:32 +00:00
g3data
gamess
gchemutils Update to 0.14.2. 2013-06-27 11:42:57 +00:00
gdis
getdp
ghemical - Convert USE_GETTEXT to USES (part 1) 2013-04-24 07:35:40 +00:00
ghmm
gnudatalanguage Finish converting the whole ports tree to USES=pkgconfig 2013-04-23 14:20:25 +00:00
gramps gramps installs a .desktop file with a MimeType and registers Mime types 2013-06-24 22:02:02 +00:00
gromacs - Update to 4.6.2 2013-06-04 08:19:33 +00:00
gsmc
gsystem
gtamsanalyzer . portlint: remove whitespace before end of line; 2013-06-20 13:06:02 +00:00
gwyddion Convert to USES to update-desktop-database on package install and uninstall 2013-06-30 21:25:03 +00:00
h5utils
harminv
hdf
hdf5
hdf5-18 Convert science to new options framework 2013-04-28 22:08:22 +00:00
hdf-java . remove shlib ABI version numbers from LIB_DEPENDS; 2013-06-20 13:25:04 +00:00
hs-bio - Update The Glorious Glasgow Haskell Compiler to version 7.6.3 2013-06-04 18:53:40 +00:00
InsightToolkit Readd specific EXAMPLES description because of specific comment in it 2013-04-29 05:39:52 +00:00
isaac-cfd . introduce optionsNG; 2013-06-20 16:19:43 +00:00
jmol
jstrack
kalzium Update the KDE Software Compilation to 4.10.5. 2013-07-04 23:34:32 +00:00
kmovisto
kst - Convert USE_GETTEXT to USES (part 3) 2013-04-24 18:10:30 +00:00
kst2 - convert USE_CMAKE to USES 2013-03-22 20:06:14 +00:00
lamprop
libctl - Does not build on 8.3-i386. Does build ok on 9.1-i386. 2013-04-15 17:29:36 +00:00
libghemical - Convert USE_GETTEXT to USES (part 1) 2013-04-24 07:35:40 +00:00
libint
libkml
liblinear Convert science to new options framework 2013-04-28 22:08:22 +00:00
liboglappth This changes almost all the "gnomehack" only USE_GNOME cases to USES= pathfix. 2013-03-19 13:04:30 +00:00
libquantum
libsvm Convert science to new options framework 2013-04-28 22:08:22 +00:00
libsvm-python
linsmith - Update to 0.99.25 2013-06-17 15:31:12 +00:00
massxpert The FreeBSD x11 team proudly presents 2013-05-25 14:37:02 +00:00
mayavi . NOPORTDOCS -> PORT_OPTIONS:MDOCS; 2013-06-20 14:05:24 +00:00
mbdyn Convert science to new options framework 2013-04-28 22:08:22 +00:00
mcstas Fix with bmake(1) 2013-05-03 08:17:33 +00:00
medit Fix build with clang. 2013-06-12 20:03:25 +00:00
meep - Fix pkgconfig 2013-06-11 01:06:48 +00:00
mei
minc
minc2
mol2ps - Update to version 0.4 2013-06-17 15:22:24 +00:00
mpb . add license (GPLv2); 2013-06-20 13:35:33 +00:00
mpqc Rectify USE_TEX to support both of teTeX and TeXLive. 2013-05-11 17:58:55 +00:00
mpqc-mpich
ncs Rectify USE_TEX to support both of teTeX and TeXLive. 2013-05-11 17:58:55 +00:00
netcdf Convert science to new options framework 2013-04-28 22:08:22 +00:00
netcdf3-ftn
netcdf4 Convert science to new options framework 2013-04-28 22:08:22 +00:00
netcdf-ftn
nifticlib
omnetpp Convert science to new options framework 2013-04-28 22:08:22 +00:00
openbabel - convert USE_CMAKE to USES 2013-03-22 20:06:14 +00:00
ovt
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR - Update to 1.23 2013-05-15 00:29:31 +00:00
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS
p5-PerlMol
p5-Physics-Unit
paje . portlint: use tab (not space) to make indentation; 2013-06-20 13:43:03 +00:00
paraview Convert science to new options framework 2013-04-28 22:08:22 +00:00
peekabot This changes almost all the "gnomehack" only USE_GNOME cases to USES= pathfix. 2013-03-19 13:04:30 +00:00
pnetcdf
psi3
psychopy - Update to 1.77.00 2013-05-16 13:04:09 +00:00
py-coards Clean up. 2013-06-16 08:29:46 +00:00
py-DendroPy
py-h5py
py-hcluster
py-mdp
py-mlpy
py-netCDF4 - Update to version 1.0.4 2013-04-30 00:39:35 +00:00
py-obspy - Update to 0.8.3 2013-05-17 14:05:33 +00:00
py-paida
py-pydicom
py-scikit-learn
py-scimath
py-scipy NOPORTDOCS -> PORT_OPTIONS:MDOCS. 2013-06-20 13:40:22 +00:00
py-ws2300
pybrain
pycdf
pynn
pyteomics - Update to 2.1.5 and [1]: 2013-05-11 07:42:20 +00:00
pyteomics.biolccc Allow to build with python3 2013-05-11 07:41:46 +00:00
qcl
qtresistors
R-cran-AMORE Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-bayesm Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-DCluster Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-e1071 Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-eco Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-Epi Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-epicalc Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-snow Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-som Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
ruby-dcl
ruby-gphys
ruby-netcdf
rubygem-ai4r
silo Convert USE_NCURSES by USES=ncurses 2013-05-06 15:34:17 +00:00
simlib
step Update the KDE Software Compilation to 4.10.5. 2013-07-04 23:34:32 +00:00
svmlight
szip . NOPORTDOCS -> PORT_OPTIONS:MDOCS; 2013-06-20 13:01:27 +00:00
udunits
v_sim - Correct DOCS handling 2013-06-14 12:00:22 +00:00
veusz - Update to 1.17.1 2013-06-19 13:53:12 +00:00
vmd Fix minor nit: use the canconical FreeBSD.org form for email addresses. 2013-03-17 16:44:03 +00:00
voro++ - add new port: science/voro++ 2013-04-16 22:46:18 +00:00
x11iraf
xmakemol
xmds Convert science to new options framework 2013-04-28 22:08:22 +00:00
Makefile Add new port science/py-coards: 2013-06-15 19:08:39 +00:00