mirror of
https://git.FreeBSD.org/ports.git
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90 lines
3.7 KiB
Plaintext
90 lines
3.7 KiB
Plaintext
bin/biofetch
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bin/dbget
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@unexec if cmp -s %D/etc/bioinformatics/seqdatabase.ini %D/etc/bioinformatics/seqdatabase.ini.sample; then rm -f %D/etc/bioinformatics/seqdatabase.ini; fi
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etc/bioinformatics/seqdatabase.ini.sample
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@exec [ ! -f %B/etc/bioinformatics/seqdatabase.ini ] && cp %B/%f %B/etc/bioinformatics/seqdatabase.ini
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@dirrm etc/bioinformatics
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%%RUBY_SITELIBDIR%%/bio.rb
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%%RUBY_SITELIBDIR%%/bio/appl/blast.rb
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%%RUBY_SITELIBDIR%%/bio/appl/blast/format8.rb
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%%RUBY_SITELIBDIR%%/bio/appl/blast/rexml.rb
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%%RUBY_SITELIBDIR%%/bio/appl/blast/xmlparser.rb
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%%RUBY_SITELIBDIR%%/bio/appl/fasta.rb
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%%RUBY_SITELIBDIR%%/bio/appl/fasta/format10.rb
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%%RUBY_SITELIBDIR%%/bio/appl/fasta/format6.rb
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%%RUBY_SITELIBDIR%%/bio/data/aa.rb
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%%RUBY_SITELIBDIR%%/bio/data/codontable.rb
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%%RUBY_SITELIBDIR%%/bio/data/keggorg.rb
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%%RUBY_SITELIBDIR%%/bio/data/na.rb
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%%RUBY_SITELIBDIR%%/bio/db.rb
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%%RUBY_SITELIBDIR%%/bio/db/aaindex.rb
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%%RUBY_SITELIBDIR%%/bio/db/ddbj.rb
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%%RUBY_SITELIBDIR%%/bio/db/embl.rb
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%%RUBY_SITELIBDIR%%/bio/db/fasta.rb
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%%RUBY_SITELIBDIR%%/bio/db/genbank.rb
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%%RUBY_SITELIBDIR%%/bio/db/genpept.rb
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%%RUBY_SITELIBDIR%%/bio/db/kegg/brite.rb
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%%RUBY_SITELIBDIR%%/bio/db/kegg/cell.rb
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%%RUBY_SITELIBDIR%%/bio/db/kegg/compound.rb
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%%RUBY_SITELIBDIR%%/bio/db/kegg/enzyme.rb
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%%RUBY_SITELIBDIR%%/bio/db/kegg/genes.rb
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%%RUBY_SITELIBDIR%%/bio/db/kegg/genome.rb
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%%RUBY_SITELIBDIR%%/bio/db/kegg/keggtab.rb
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%%RUBY_SITELIBDIR%%/bio/db/kegg/microarray.rb
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%%RUBY_SITELIBDIR%%/bio/db/litdb.rb
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%%RUBY_SITELIBDIR%%/bio/db/medline.rb
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%%RUBY_SITELIBDIR%%/bio/db/prosite.rb
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%%RUBY_SITELIBDIR%%/bio/db/refseq.rb
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%%RUBY_SITELIBDIR%%/bio/db/sptr.rb
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%%RUBY_SITELIBDIR%%/bio/db/swissprot.rb
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%%RUBY_SITELIBDIR%%/bio/db/transfac.rb
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%%RUBY_SITELIBDIR%%/bio/db/trembl.rb
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%%RUBY_SITELIBDIR%%/bio/extend.rb
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%%RUBY_SITELIBDIR%%/bio/feature.rb
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%%RUBY_SITELIBDIR%%/bio/io/brdb.rb
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%%RUBY_SITELIBDIR%%/bio/io/dbget.rb
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%%RUBY_SITELIBDIR%%/bio/io/fetch.rb
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%%RUBY_SITELIBDIR%%/bio/io/flatfile.rb
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%%RUBY_SITELIBDIR%%/bio/io/pubmed.rb
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%%RUBY_SITELIBDIR%%/bio/io/registry.rb
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%%RUBY_SITELIBDIR%%/bio/io/sql.rb
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%%RUBY_SITELIBDIR%%/bio/location.rb
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%%RUBY_SITELIBDIR%%/bio/matrix.rb
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%%RUBY_SITELIBDIR%%/bio/pathway.rb
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%%RUBY_SITELIBDIR%%/bio/reference.rb
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%%RUBY_SITELIBDIR%%/bio/sequence.rb
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@dirrm %%RUBY_SITELIBDIR%%/bio/appl/blast
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@dirrm %%RUBY_SITELIBDIR%%/bio/appl/fasta
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@dirrm %%RUBY_SITELIBDIR%%/bio/appl
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@dirrm %%RUBY_SITELIBDIR%%/bio/data
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@dirrm %%RUBY_SITELIBDIR%%/bio/db/kegg
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@dirrm %%RUBY_SITELIBDIR%%/bio/db
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@dirrm %%RUBY_SITELIBDIR%%/bio/io
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@dirrm %%RUBY_SITELIBDIR%%/bio
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%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/biofetch.rb
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%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/fasta2tab.rb
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%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/fsplit.rb
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%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/gb2fasta.rb
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%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/gb2tab.rb
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%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/gbtab2mysql.rb
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%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/genes2nuc.rb
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%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/genes2pep.rb
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%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/genes2tab.rb
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%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/genome2rb.rb
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%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/genome2tab.rb
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%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/gt2fasta.rb
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%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/pmfetch.rb
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%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/pmsearch.rb
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%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/ssearch2tab.rb
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%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/tfastx2tab.rb
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%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/vs-genes.rb
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%%PORTDOCS%%@dirrm %%RUBY_EXAMPLESDIR%%/bio
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%%PORTDOCS%%%%RUBY_DOCDIR%%/bio/ChangeLog
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%%PORTDOCS%%%%RUBY_DOCDIR%%/bio/README
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%%PORTDOCS%%%%RUBY_DOCDIR%%/bio/ja/BioRuby.rd.ja
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%%PORTDOCS%%%%RUBY_DOCDIR%%/bio/ja/Design.rd.ja
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%%PORTDOCS%%%%RUBY_DOCDIR%%/bio/ja/TODO.rd.ja
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%%PORTDOCS%%%%RUBY_DOCDIR%%/bio/ja/Tutorial.rd.ja
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%%PORTDOCS%%@dirrm %%RUBY_DOCDIR%%/bio/ja
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%%PORTDOCS%%@dirrm %%RUBY_DOCDIR%%/bio
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