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mirror of https://git.FreeBSD.org/ports.git synced 2024-12-04 01:48:54 +00:00
freebsd-ports/biology
Dmitry Marakasov 1cda3966bb - Add LICENSE_FILE
- Switch to options helpers
2015-10-14 23:51:20 +00:00
..
ariadne
artemis
avida - Unbreak on PowerPC by using atomicops implementation for Linux and GCC 2015-09-02 12:29:09 +00:00
babel Unbreak the build on PowerPC (at least) by always using va_copy() macro for 2015-09-02 10:10:06 +00:00
bcftools
biococoa Make all GNUstep ports install into the System domain so that the Local domain is available for stuff built from source. 2015-09-19 10:33:34 +00:00
biojava
blat
bwa BWA is a program for aligning sequencing reads against a large reference 2015-09-25 18:39:36 +00:00
cd-hit - Use compiler:openmp instead of gcc 2015-09-19 13:12:44 +00:00
cdbfasta Fast indexing and retrieval of FASTA records from flat file data bases. 2015-09-25 18:37:24 +00:00
chemeq
clustalw
consed
crux Unbreak the build on PowerPC, it had nothing to do with "error in pthreads": 2015-09-02 09:23:05 +00:00
emboss
fasta - Do not falsely advertise that PowerPC build runs out of space and fails 2015-09-02 10:35:25 +00:00
fasta3
fastdnaml
fastool Simple and quick FastQ and FastA tool for file reading and conversion. 2015-09-25 18:35:14 +00:00
fasttree FastTree infers approximately-maximum-likelihood phylogenetic trees from 2015-09-25 18:34:29 +00:00
fastx-toolkit The FASTX-Toolkit is a collection of command line tools for Short-Reads 2015-09-25 18:33:18 +00:00
fluctuate
garlic
gff2ps Convert ports to use the options helpers in categories [abc]*, and minor fixes. 2015-08-19 13:29:59 +00:00
gmap
gperiodic
grappa biology/grappa: define license (GPLv2) 2015-09-25 18:55:08 +00:00
hmmer
htslib
iolib - Update to 1.14.4 2015-10-07 00:26:33 +00:00
jalview
lagan
lamarc Remove ansi version fo wxGTK 2.8 and only keep the unicode version 2015-09-16 19:51:26 +00:00
libgtextutils Gordon's text utilities. 2015-09-25 18:31:28 +00:00
libsbml - Add LICENSE_FILE 2015-10-14 23:51:20 +00:00
linux-foldingathome
mafft Use BROKEN helpers 2015-06-27 14:30:19 +00:00
mapm3
migrate - Update options 2015-06-28 15:30:41 +00:00
molden
mopac
mrbayes
mummer Fix build on mips by properly respecting compiler and flags 2015-08-05 12:18:41 +00:00
muscle
ncbi-blast+
ncbi-toolkit
njplot
ortep3 Convert ports to use the options helpers in categories [abc]*, and minor fixes. 2015-08-19 13:29:59 +00:00
p5-AcePerl Make it so that the default Perl is always called perl5. 2015-09-14 12:19:48 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3 Make it so that the default Perl is always called perl5. 2015-09-14 12:19:48 +00:00
p5-Bio-Glite
p5-Bio-Graphics Make it so that the default Perl is always called perl5. 2015-09-14 12:19:48 +00:00
p5-Bio-MAGETAB
p5-Bio-NEXUS Make it so that the default Perl is always called perl5. 2015-09-14 12:19:48 +00:00
p5-Bio-Phylo
p5-Bio-SCF
p5-bioperl Make it so that the default Perl is always called perl5. 2015-09-14 12:19:48 +00:00
p5-bioperl-run
paml
phrap
phred
phylip Unbreak 2015-07-28 17:52:11 +00:00
phyml
platon Convert ports to use the options helpers in categories [abc]*, and minor fixes. 2015-08-19 13:29:59 +00:00
plink
plinkseq
povchem
primer3
protomol Convert ports to use the options helpers in categories [abc]*, and minor fixes. 2015-08-19 13:29:59 +00:00
psi88
py-biopython Update to 1.65. 2015-08-05 10:32:31 +00:00
pycogent
pyfasta
python-nexus
recombine
ruby-bio - Fix typo 2015-10-10 23:15:16 +00:00
samtools
seaview biology/seaview: Update version 4.5.4.6=>4.5.4.7 2015-10-01 10:02:21 +00:00
seqan
seqio
seqtools biology/seqtools: 4.35 -> 4.36 2015-08-08 11:22:24 +00:00
sim4
ssaha
t_coffee
tinker Convert ports to use the options helpers in categories [abc]*, and minor fixes. 2015-08-19 13:29:59 +00:00
treepuzzle
treeviewx - Pet portlint 2015-10-14 23:50:11 +00:00
tRNAscan-SE
ugene biology/ugene: qt4-linguist -> qt4-linguisttools 2015-08-18 20:02:45 +00:00
velvet
wise
xmolwt Fix previous commit. 2015-08-19 13:41:51 +00:00
Makefile BWA is a program for aligning sequencing reads against a large reference 2015-09-25 18:39:36 +00:00