Antoine Brodin a3f1ec2398 Update devel/doxygen to 1.8.7 ... Update dependent ports to build with it Most of work by: pi@ Exp-run: self PR: ports/190943		2014-08-09 19:39:09 +00:00
..
aamath
abacus
abakus
abs
add
algae
algotutor
alt-ergo
analitza
ann
apc
aribas
armadillo
arpack
arpack-ng
arpack++
asir2000
aspcud
asymptote
atlas
atlas-devel
bamg
bargraph
biggles
bihar
blacs
blas
blitz++
blocksolve95
bsdnt
calc	Unbreak after RM was changed to /bin/rm -f	2014-07-31 12:02:34 +00:00
calcoo
calctool
cantor
carve
cblas
ccmath
cgal
chaco
chryzodus
clarence
clasp
clipper
cln
cloog
clp
coinmp
concorde
convertall
coq
crlibm
cvc3
dcdflib
diehard
dieharder
djbfft
drgeo
dynare
e
edenmath	Bump PORTREVISION on more ports that depend on libgcrypt after the update	2014-08-05 22:13:29 +00:00
eigen2
eigen3
eispack
elmer-umfpack
emc2
ent
entropy
ess
eukleides
eval
facile
fann
fflas-ffpack	Update devel/doxygen to 1.8.7	2014-08-09 19:39:09 +00:00
fftw
fftw3
fftw3-float
fftw3-long
fftw3-quad
fftw-float
fityk
foma	Honour CPPFLAGS and LDFLAGS to fix readline support on current.	2014-08-09 18:32:11 +00:00
fpc-fftw
fpc-gmp
fpc-numlib
freemat
fricas
fxt
galculator
gambit
gap
gcalctool
gdcalc
geg
geogebra-i18n
geonext
gexpr
ggobi
giacxcas
GiNaC
givaro	Update devel/doxygen to 1.8.7	2014-08-09 19:39:09 +00:00
gkmap
glgraph
glm
glpk
gmm++
gmp
gmp-ecm
gnubc
gnumeric
gnuplot
goblin
gotoblas
grace
gracetmpl
graphthing
gretl
gri
gringo
grpn
gsl
hexcalc
hfst
hs-Agda
hs-categories
hs-comonad
hs-comonad-transformers
hs-comonads-fd
hs-contravariant
hs-data-lens
hs-data-lens-template
hs-distributive
hs-erf
hs-groupoids
hs-ieee754
hs-math-functions
hs-mwc-random
hs-nats
hs-NumInstances
hs-pointed
hs-probability
hs-semigroupoid-extras
hs-semigroupoids
hs-semigroups
hs-statistics
hs-vector-space
igraph
isabelle	Mark BROKEN: Build seems to hang on the package builders	2014-07-31 19:35:56 +00:00
ised
itl
jacal
jags
jakarta-commons-math
jakarta-commons-math3
jama
javanns
javaview
jeuclid
jlatexmath
jsmath
jsmath-fonts
jsmath-fonts-sprite
jtransforms
jts
kalgebra
kash3	Convert some more USE_BZIP2 to USES=tar:bzip2	2014-07-29 21:43:17 +00:00
kbruch
kcalc
kig
kktdirect
kmplot
labplot
lambda	Add USES=readline to fix build on current.	2014-07-29 22:44:10 +00:00
lapack	- Clarify LICENSE	2014-08-05 19:53:10 +00:00
lapack95
lapack++
lapacke
laspack
ldouble
levmar
libflame
libjbigi
liblbfgs
libmissing
libneural
libocas
liborigin
libqalculate
libR
libranlip
libRmath
libtommath
libtsnnls
linpack
lll_spect
lp_solve
lrng
ltl
ltl2ba
lybniz
mate-calc
mathomatic
matio
matlab-installer	Remove the final usages of USE_XZ from the tree, and replace them with	2014-07-29 21:25:30 +00:00
matrix
maxima	Use staging	2014-07-31 17:56:59 +00:00
mbasecalc
metis
metis4
metis-edf
mingw32-libgmp
minisat
miracl
moo
mpc
mpexpr
mpfr
mpir
mprime
msieve
mtl
mtrxmath
mumps
mumps-mpich
muparser
naturalmath
nauty
ndiff
newmat
ngraph
ntl
numdiff
nyh-hoc
ocaml-ocamlgraph
ocaml-zarith
ocamlgsl
octave	- Switch graphics/GraphicsMagick to USES=libtool, drop .la files	2014-08-04 19:34:31 +00:00
octave-forge
octave-forge-actuarial
octave-forge-ad
octave-forge-audio
octave-forge-base
octave-forge-bim
octave-forge-bioinfo
octave-forge-cgi
octave-forge-civil-engineering
octave-forge-communications
octave-forge-control
octave-forge-data-smoothing
octave-forge-database
octave-forge-dataframe
octave-forge-dicom
octave-forge-divand
octave-forge-econometrics
octave-forge-engine
octave-forge-fenv
octave-forge-financial
octave-forge-fits
octave-forge-fl-core
octave-forge-fpl
octave-forge-fuzzy-logic-toolkit
octave-forge-ga
octave-forge-general
octave-forge-generate_html
octave-forge-geometry
octave-forge-gnuplot
octave-forge-gsl
octave-forge-ident
octave-forge-image
octave-forge-informationtheory
octave-forge-integration
octave-forge-io
octave-forge-irsa
octave-forge-linear-algebra
octave-forge-lssa
octave-forge-ltfat
octave-forge-mapping
octave-forge-mechanics
octave-forge-miscellaneous
octave-forge-missing-functions
octave-forge-msh
octave-forge-multicore
octave-forge-mvn
octave-forge-nan
octave-forge-ncarray
octave-forge-netcdf
octave-forge-nlwing2
octave-forge-nnet
octave-forge-nurbs
octave-forge-ocs
octave-forge-oct2mat
octave-forge-octcdf
octave-forge-octclip
octave-forge-octgpr
octave-forge-octproj
octave-forge-odebvp
octave-forge-odepkg
octave-forge-optim	- Update to 1.4.0.	2014-07-31 20:23:19 +00:00
octave-forge-optiminterp
octave-forge-outliers
octave-forge-parallel
octave-forge-pdb
octave-forge-plot
octave-forge-pt_br
octave-forge-quaternion
octave-forge-queueing
octave-forge-secs1d
octave-forge-secs2d
octave-forge-secs3d
octave-forge-signal
octave-forge-simp
octave-forge-sockets
octave-forge-specfun
octave-forge-special-matrix
octave-forge-spline-gcvspl
octave-forge-splines
octave-forge-statistics
octave-forge-strings
octave-forge-struct
octave-forge-symband
octave-forge-symbolic
octave-forge-tcl-octave
octave-forge-tsa
octave-forge-video
octave-forge-xraylib
octave-forge-zenity
ogdf
oleo
open-axiom
openblas
openfst
orpie	math/orpie: update to 1.5.2	2014-08-03 13:02:11 +00:00
p5-AI-DecisionTree
p5-AI-Genetic
p5-AI-NeuralNet-BackProp
p5-AI-Perceptron
p5-Algorithm-Combinatorics
p5-Algorithm-CurveFit
p5-Algorithm-KMeans
p5-Algorithm-Munkres
p5-bignum
p5-Bit-ShiftReg
p5-Bit-Vector
p5-Bit-Vector-Minimal
p5-CAD-Calc
p5-Chart-Math-Axis
p5-Data-Float
p5-Date-Handler
p5-Geo-Coordinates-UTM
p5-Geo-Distance
p5-Geo-Distance-XS
p5-GIS-Distance
p5-GIS-Distance-Fast
p5-GIS-Distance-Lite
p5-Graph
p5-Math-Algebra-Symbols
p5-Math-Base36
p5-Math-Base85
p5-Math-BaseCalc
p5-Math-BaseCnv
p5-Math-Bezier
p5-Math-Bezier-Convert
p5-Math-BigInt
p5-Math-BigInt-FastCalc
p5-Math-BigInt-GMP
p5-Math-BigInt-Pari
p5-Math-BigRat
p5-Math-Calc-Units
p5-Math-CDF	- Shorten COMMENT	2014-07-31 10:05:49 +00:00
p5-Math-Cephes
p5-Math-Combinatorics
p5-Math-Complex
p5-Math-ConvexHull
p5-Math-Currency
p5-Math-Derivative
p5-Math-Evol
p5-Math-Expr
p5-Math-FFT
p5-Math-FixedPrecision
p5-Math-Fleximal
p5-Math-Geometry	- Add LICENSE	2014-07-31 10:05:55 +00:00
p5-Math-Geometry-Planar
p5-Math-Geometry-Planar-GPC
p5-Math-Geometry-Planar-GPC-Polygon
p5-Math-Geometry-Planar-Offset
p5-Math-Geometry-Voronoi
p5-Math-GMP
p5-Math-GMPf
p5-Math-GMPq
p5-Math-GMPz
p5-Math-Gradient
p5-Math-GSL
p5-Math-Int64
p5-Math-Int128
p5-Math-Interpolate
p5-Math-Intersection-StraightLine
p5-Math-Logic
p5-Math-Matrix
p5-Math-MatrixReal
p5-Math-MPC
p5-Math-MPFR	math/p5-Math-MPFR: 3.21 -> 3.22	2014-07-30 10:55:21 +00:00
p5-Math-NumberCruncher
p5-Math-Pari
p5-Math-Polygon
p5-Math-Polygon-Tree
p5-Math-Polynomial-Solve
p5-Math-Prime-XS
p5-Math-Random
p5-Math-Random-ISAAC
p5-Math-Random-ISAAC-XS
p5-Math-Random-MT
p5-Math-Random-MT-Auto
p5-Math-Random-OO
p5-Math-Random-Secure
p5-Math-RandomOrg
p5-Math-Round
p5-Math-Round-Var
p5-Math-RPN
p5-Math-Sequence
p5-Math-Series
p5-Math-SigFigs
p5-Math-SimpleVariable
p5-Math-Spline
p5-Math-String
p5-Math-Symbolic
p5-Math-Symbolic-Custom-CCompiler
p5-Math-Symbolic-Custom-Contains
p5-Math-Symbolic-Custom-ErrorPropagation
p5-Math-Symbolic-Custom-LaTeXDumper
p5-Math-Symbolic-Custom-Pattern
p5-Math-Symbolic-Custom-Simplification
p5-Math-Symbolic-Custom-Transformation
p5-Math-SymbolicX-BigNum
p5-Math-SymbolicX-Complex
p5-Math-SymbolicX-Error
p5-Math-SymbolicX-Inline
p5-Math-SymbolicX-NoSimplification
p5-Math-SymbolicX-ParserExtensionFactory
p5-Math-SymbolicX-Statistics-Distributions
p5-Math-TrulyRandom
p5-Math-Units
p5-Math-Vec
p5-Math-VecStat
p5-Math-VectorReal
p5-NetCDF
p5-Number-Compare
p5-Number-Fraction
p5-Number-Uncertainty
p5-Number-WithError
p5-Number-WithError-LaTeX
p5-Parse-Range
p5-Roman
p5-Set-IntSpan
p5-Set-IntSpan-Fast
p5-Set-IntSpan-Fast-XS
p5-Set-Partition
p5-Set-Window
p5-Statistics-Basic
p5-Statistics-Benford
p5-Statistics-ChiSquare
p5-Statistics-Contingency
p5-Statistics-Descriptive
p5-Statistics-Descriptive-Discrete
p5-Statistics-Distributions
p5-Statistics-Forecast
p5-Statistics-Frequency
p5-Statistics-LineFit
p5-Statistics-Lite
p5-Statistics-LTU
p5-Statistics-OLS
p5-Statistics-R
p5-Statistics-Regression
p5-Statistics-TTest
p5-Task-Math-Symbolic
p5-Text-AsciiTeX
pari	- Add additional mirror to fix fetch	2014-07-31 19:15:45 +00:00
parmetis
parmgridgen
pdal	Change order of categories to fix PKGORIGIN	2014-08-04 13:21:14 +00:00
PDL
pear-Math_BigInteger
pear-Math_Combinatorics
pecl-big_int
pecl-bitset
pecl-stats
pecl-trader
petsc
php5-bcmath
php5-gmp
php53-bcmath
php53-gmp
php55-bcmath
php55-gmp
physcalc
plman
ploticus
ploticus-nox11
plplot	In some straightforward cases, protect documentation behind	2014-08-04 03:40:14 +00:00
plplot-ada
primegen
prng
proofgeneral
pspp
pure-mpfr	1: Stagify.	2014-08-07 14:42:45 +00:00
pure-rational	Stagify.	2014-08-07 14:44:14 +00:00
py-apgl
py-basemap	math/py-basemap: support stage	2014-08-05 12:58:54 +00:00
py-basemap-data
py-bitvector
py-bottleneck
py-fastcluster
py-ffc
py-fiat
py-fpconst
py-gato
py-gmpy
py-gnuplot
py-graphillion
py-gsl
py-igraph
py-mathdom
py-matplotlib
py-mpmath
py-munkres
py-networkx
py-numarray
py-numeric
py-numexpr
py-numpy
py-nzmath
py-pandas
py-patsy
py-plastex
py-probstat
py-pybloom
py-pymc
py-roman
py-scientific
py-statsmodels
py-svgmath
py-symeig
py-sympy
py-ufl
py-viper
qalculate
qd
qhull
qhull5
qrupdate
qtiplot
qtiplot-doc
qtoctave
qwtplot3d-qt4
R	Fix build on head by adding missing USES=readline	2014-08-01 07:49:12 +00:00
R-cran-bdsmatrix
R-cran-car
R-cran-ChangeAnomalyDetection
R-cran-coda
R-cran-deldir
R-cran-dlmodeler
R-cran-forecast
R-cran-Formula
R-cran-fracdiff
R-cran-gpclib
R-cran-gss
R-cran-gtable
R-cran-igraph
R-cran-inline
R-cran-KFAS
R-cran-labeling
R-cran-LearnBayes
R-cran-MCMCpack
R-cran-memisc
R-cran-mvtnorm
R-cran-nnls
R-cran-outliers
R-cran-psych
R-cran-quadprog
R-cran-RcppArmadillo
R-cran-RHmm
R-cran-RSvgDevice
R-cran-sandwich
R-cran-sm
R-cran-sp
R-cran-spdep
R-cran-sspir
R-cran-stabledist
R-cran-SuppDists
R-cran-xts
R-cran-Zelig
R-cran-zoo
randlib
rapid
reduce
reed-solomon
rkward-kde4
rngstreams
rocs
rpcalc
rpy
rpy2
ruby-algebra
ruby-fftw3
ruby-gnuplot
ruby-gsl
ruby-narray
ruby-narray_miss
ruby-numru_misc
ruby-numru_units
rubygem-narray
rubygem-narray_miss
rubygem-numru-misc
rubygem-numru-units
saga
sage
sc
scalapack
scilab
scilab-toolbox-sivp
scilab-toolbox-swt
sdpa	Stagify.	2014-08-08 03:47:26 +00:00
sdpa-gmp
sdpara	Stagify.	2014-08-08 03:44:02 +00:00
sedumi
sfft
sfst	Add USES=readline to fix build on current.	2014-07-29 22:44:10 +00:00
simd-viterbi
slatec
slgrace
snns
solitaire	In some straightforward cases, protect documentation behind	2014-08-04 03:40:14 +00:00
spar	Add USES=readline to fix build on current.	2014-07-29 22:39:31 +00:00
spblas
speedcrunch
spooles
spooles-mpich
stp
suitesparse
superlu
superlu_mt
surf
tablix
taucs
testu01
tetgen
timbl
tomsfastmath
topaz
triangle
trlan
truthtable
tvmet	In some straightforward situations, protect examples behind PORTEXAMPLES,	2014-08-06 04:34:23 +00:00
ufc
ump	1: Stagify.	2014-08-08 03:04:47 +00:00
units
unixstat
unuran
vtk5
vtk5-data
vtk6
wcalc	Add USES=readline to fix build on current.	2014-07-29 22:37:47 +00:00
wfmath
why3
why3-gpl
wingz3
wxMaxima
x12arima
xblas
xgobi
xgraph
xlapack
xldlas
xplot
xppaut
xspread
yacas
Makefile	New port: math/pdal	2014-08-02 13:16:57 +00:00