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STAR is an extremely fast RNA-seq aligner, an alternative to tophat2, hisat2, bowtie, subread, etc.
12 lines
607 B
Plaintext
12 lines
607 B
Plaintext
STAR (Spliced Transcripts Alignment to a Reference) aims to achieve accurate
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alignment of high-throughput RNA-seq data.
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STAR is based on a previously undescribed RNA-seq alignment algorithm that uses
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sequential maximum mappable seed search in uncompressed suffix arrays followed
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by seed clustering and stitching procedure. STAR outperforms other aligners by
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a factor of >50 in mapping speed, aligning to the human genome 550 million 2 x
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76 bp paired-end reads per hour on a modest 12-core server, while at the same
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time improving alignment sensitivity and precision
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WWW: https://github.com/alexdobin/STAR
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