mirror/freebsd-ports
1
0
Fork 0
mirror of https://git.FreeBSD.org/ports.git synced 2024-11-20 00:21:35 +00:00
Code Issues Releases Activity
591cfcbbcf
freebsd-ports/science
History
Tobias Kortkamp 8f326d1f65 science/py-scipy: Unbreak build with GCC 10 
scipy/sparse/linalg/eigen/arpack/ARPACK/SRC/cnaitr.f:666:35:

  383 |             call svout (logfil, 1, rnorm, ndigit,
      |                                   2
......
  666 |             call svout (logfil, 2, rtemp, ndigit,
      |                                   1
Error: Rank mismatch between actual argument at (1) and actual argument at (2) (scalar and rank-1)
scipy/sparse/linalg/eigen/arpack/ARPACK/SRC/cnaitr.f:737:39:

  383 |             call svout (logfil, 1, rnorm, ndigit,
      |                                   2
......
  737 |                 call svout (logfil, 2, rtemp, ndigit,
      |                                       1
Error: Rank mismatch between actual argument at (1) and actual argument at (2) (scalar and rank-1)
gfortran10:f77: scipy/sparse/linalg/eigen/arpack/ARPACK/SRC/dsesrt.f
scipy/sparse/linalg/eigen/arpack/ARPACK/SRC/dsaitr.f:671:35:

  369 |             call dvout (logfil, 1, rnorm, ndigit,
      |                                   2
......
  671 |             call dvout (logfil, 2, xtemp, ndigit,
      |                                   1
Error: Rank mismatch between actual argument at (1) and actual argument at (2) (scalar and rank-1)
scipy/sparse/linalg/eigen/arpack/ARPACK/SRC/dsaitr.f:743:39:

  369 |             call dvout (logfil, 1, rnorm, ndigit,
      |                                   2
......
  743 |                 call dvout (logfil, 2, xtemp, ndigit,
      |                                       1
Error: Rank mismatch between actual argument at (1) and actual argument at (2) (scalar and rank-1)

http://package18.nyi.freebsd.org/data/121amd64-default-PR244494/2020-06-10_18h04m44s/logs/errors/py27-scipy-1.2.2_1.log
http://package18.nyi.freebsd.org/data/121amd64-default-PR244494/2020-06-10_18h04m44s/logs/errors/py37-scipy-1.2.2_1.log

A better fix would be to update this port to >= 1.5.1 which should
support GCC 10 out of the box and would allow -std=legacy to be
removed again.

PR:		246700
2020-07-05 11:02:17 +00:00
..
2d-rewriter science/2d-rewriter: 2020-03-29 05:55:51 +00:00
abinit Mark BROKEN: fails to build 2020-05-29 08:38:54 +00:00
afni science/afni: update to 20.1.18 2020-07-02 06:55:49 +00:00
agrum science/agrum: Update 0.17.3 -> 0.18.0 2020-06-15 08:26:22 +00:00
aircraft-datcom science/aircraft-datcom: Unbreak build with GCC 10 2020-07-04 11:07:57 +00:00
ALPSCore - Swap back from net/openmpi3 to net/openmpi 2020-04-21 21:26:56 +00:00
antioch
apbs
atompaw
avogadro2
avogadrolibs science/avogadrolibs: Remove a broken option VTK set to default by mistake 2020-04-27 16:09:56 +00:00
bagel Chase ScaLAPACK´s upgrade and resolve conflict between cblas and openblas. 2020-06-14 09:14:03 +00:00
bddsolve
berkeleygw science/berkeleygw: Unbreak build with GCC 10 2020-06-25 06:50:17 +00:00
bodr
brian Deprecate some ports using deprecated version of python 2020-03-08 17:01:46 +00:00
buddy
cdcl
cdf science/cdf: Unbreak build with GCC 10 2020-07-04 10:40:42 +00:00
cdk
cdo Remove ACCEPT_USE_OF_DEPRECATED_PROJ_API_H 2020-05-16 10:51:44 +00:00
cgnslib science/cgnslib: Unbreak build with GCC 10 2020-07-04 11:22:08 +00:00
cgribex Update to 1.9.4 2020-05-16 10:51:49 +00:00
checkmol - Remove compat < 11 dependencies from bootstrap and compiler. It could fix problems 2020-03-06 06:26:05 +00:00
chemical-mime-data
chemps2 Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas 2020-05-06 16:39:12 +00:00
chemtool
chemtool-devel
chrono - Update net/openmpi to 4.0.3 (openmpi 1 is deprecated) 2020-04-19 09:49:02 +00:00
clhep
clipper
code_saturne Upgrade to v6.1.1 and add Scotch´s support. 2020-06-15 16:02:40 +00:00
colt
coordgenlibs science/coordgenlibs: Update 1.4.0-6 -> 1.4.1 2020-06-29 00:46:52 +00:00
cp2k Re-add port: science/cp2k: Quantum chemistry and solid state physics software package; Update 6.1.0 -> 7.1.0-20200518 2020-05-20 02:27:15 +00:00
cp2k-data science/cp2k-data: Update 6.1.0 -> 7.1.0 2020-05-25 04:00:02 +00:00
crf++
dalton Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas. 2020-05-06 16:11:14 +00:00
datawarrior Deprecate java/openjfx8-devel consumers 2020-03-19 09:33:13 +00:00
dcl science/dcl: Unbreak build with GCC 10 2020-07-04 06:54:39 +00:00
devisor
dftbplus science/dftbplus: Change to python3. 2020-05-20 00:36:40 +00:00
dkh
dlib-cpp science/dlib-cpp and science/py-dlib: Update to 19.20 2020-06-23 14:41:29 +00:00
dlpoly-classic science/dlpoly-classic: Change dependency to openmpi3 2020-04-12 14:31:17 +00:00
drawxtl
dvc Deprecate a few ports 2020-02-23 15:25:53 +00:00
eccodes Mark as BROKEN on powerpc64: 2020-05-18 03:05:44 +00:00
elk science/elk: Update 5.2.14 -> 6.8.4 2020-06-30 15:12:48 +00:00
elmerfem science/elmerfem: Prepare for Qt5.15 2020-06-23 15:49:30 +00:00
epte
erd
ergo Some days it does not pay to get out of bed. 2020-05-15 04:25:56 +00:00
erkale - Update math/armadillo to 9.870.2 2020-05-06 21:19:22 +00:00
erkale-pseudopotentials science/erkale-pseudopotentials: Update g20190114 -> g20200426 2020-05-07 00:32:03 +00:00
fastcap
fasthenry
fastjet science/fastjet: Enable plugins; Fix the config program 2020-05-26 17:10:15 +00:00
fisicalab Return theraven's ports to the pool after safekeeping his commit bit. 2020-03-05 20:49:05 +00:00
fleur Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas. 2020-05-06 16:11:14 +00:00
fsom
fvcom
fvcom-mpi - Update net/openmpi to 4.0.3 (openmpi 1 is deprecated) 2020-04-19 09:49:02 +00:00
gabedit Drop dependency on devel/openmp 2020-03-08 21:56:36 +00:00
gamess-us Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas. 2020-05-06 16:11:14 +00:00
gchemutils
gdma
getdp
ghemical science/ghemical: Not compatible with the upcoming OpenBabel-3 => disable this internal option 2020-05-10 21:40:08 +00:00
ghmm
gnudatalanguage x11-toolkits/wxgtk30: Update to 3.0.5.1 2020-05-17 05:55:12 +00:00
gpaw-setups
gramps Convert the tree to use PY_PILLOW 2020-03-24 19:54:57 +00:00
grib_api
gromacs science/gromacs: Fix plist when MPI=on 2020-05-05 01:20:18 +00:00
gsmc
gtamsanalyzer
h5utils
h5z-zfp
harminv
hdf
hdf5 Revert r529778, ports depending on it were not tested 2020-03-29 20:41:45 +00:00
hdf5-18
healpix
hepmc3 science/hepmc3: Update science/hepmc3: Update 3.2.1 -> 3.2.2 2020-06-15 04:02:53 +00:00
highfive science/highfiv: Update 2.2 -> 2.2.1 2020-04-29 07:05:09 +00:00
hypre science/hypre: Update 2.18.2 -> 2.19.0 2020-05-27 08:08:16 +00:00
iboview Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas 2020-05-06 16:39:12 +00:00
InsightToolkit - Update devel/gdcm to 3.0.7. 2020-07-04 20:53:55 +00:00
isaac-cfd science/isaac-cfd: Unbreak build with GCC 10 2020-07-04 08:00:41 +00:00
jdftx science/jdftx: Update 1.5.0 -> 1.6.0 2020-06-15 20:29:51 +00:00
jmol science/jmol: Update 14.30.2 -> 14.31.0 2020-05-28 17:29:56 +00:00
jstrack
kalzium Update KDE's Application (release-service) to 20.04.2 2020-06-13 08:14:07 +00:00
kim-api
kst2 science/kst2: prepare for Qt5-5.15 2020-05-18 16:42:25 +00:00
lammps science/lammps: Update 15Jun2020 -> 30Jun2020 2020-06-29 19:55:53 +00:00
lamprop
latte science/latte: Update 1.2.1 -> 1.2.2 2020-05-07 01:02:37 +00:00
libaec
libccp4 science/libccp4: Unbreak build with GCC 10 2020-07-04 11:10:29 +00:00
libcint science/libcint: Update 3.0.19 -> 3.0.20 2020-05-15 15:44:22 +00:00
libctl
libefp
libgeodecomp
libghemical
libgridxc Mark BROKEN 2020-05-16 10:02:19 +00:00
libint
libint2
libkml Convert REINPLACE_CMD to patch files 2020-05-08 20:50:41 +00:00
liblinear Update to 2.30 2020-06-14 14:22:35 +00:00
libmsym
liboglappth
libquantum
libssm
libsvm
libsvm-python
libvdwxc
libxc science/libxc: remove patch 2020-05-02 20:20:28 +00:00
liggghts science/liggghts: Remove the unnecessary VTK_DIR 2020-04-27 16:26:42 +00:00
lm Move devel/swig30 to devel/swig and update to 4.0.1 2020-06-17 18:17:45 +00:00
luscus
madness Update devel/tbb to 2020.2 and bump dependent port's revisions 2020-04-01 14:14:51 +00:00
maeparser science/maeparser: Update 1.2.2 -> 1.2.3 2020-03-17 07:19:57 +00:00
massxpert Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 6). 2020-05-28 08:43:29 +00:00
mbdyn Mark as BROKEN on powerpc64: 2020-05-18 01:38:12 +00:00
mcstas
mcstas-comps
mcxtrace
mcxtrace-comps
mdynamix
medit
metaphysicl
minc2
mmdb2
mmtf-cpp
mol2ps - Remove compat < 11 dependencies from bootstrap and compiler. It could fix problems 2020-03-06 06:26:05 +00:00
molgif
molscript
molsketch
mpb
mpqc
msms
multiwfn Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas. 2020-05-06 16:11:14 +00:00
namd
nest Drop dependency on devel/openmp 2020-03-08 21:56:36 +00:00
netcdf
netcdf-cxx
netcdf-fortran
nifticlib
nwchem science/nwchem: Update to 7.0.0-release 2020-05-07 07:58:36 +00:00
nwchem-data science/nwchem-data: Update 6.8.1.20190125 -> 7.0.0 2020-05-07 02:54:17 +00:00
octopus Mark BROKEN 2020-05-16 10:03:40 +00:00
openbabel
openkim
openkim-models
opensim-core Move devel/swig30 to devel/swig and update to 4.0.1 2020-06-17 18:17:45 +00:00
opensph
opsin
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Coordinates-Converter Add NO_ARCH 2020-04-21 19:47:40 +00:00
p5-Geo-Coordinates-Converter-iArea Cosmetic change 2020-04-21 19:37:40 +00:00
p5-Geo-WebService-Elevation-USGS - Update to 0.117 2020-04-18 08:35:03 +00:00
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
packmol
pagmo2 science/pagmo2: Update 2.11.4 -> 2.15.0-90 2020-06-10 16:05:16 +00:00
paje
paraview Chanse update of devel/libffi 2020-07-04 18:11:42 +00:00
pcmsolver
PETSc
plumed science/plumed: Broken on i386 2020-05-23 21:59:28 +00:00
pnetcdf - Update net/openmpi to 4.0.3 (openmpi 1 is deprecated) 2020-04-19 09:49:02 +00:00
pulseview science/pulseview: prepare for Qt5-5.15 2020-05-30 10:09:51 +00:00
py-abipy math/py-seaborn: Update to 0.10.1 2020-05-31 21:03:37 +00:00
py-asdf Update to 2.6.0 2020-04-24 18:03:39 +00:00
py-ase science/py-ase: Update 3.19.0 -> 3.19.1 2020-04-04 07:30:04 +00:00
py-avogadrolibs science/py-avogadrolib: Update 1.91.0-107 -> 1.93.0 2020-02-06 07:17:20 +00:00
py-cdo
py-chainer Bump PORTREVISION for devel/protobuf shlib change 2020-06-03 18:32:05 +00:00
py-chainer-chemistry
py-chempy science/py-chempy: Update 0.7.10 -> 0.7.11 2020-05-30 07:28:06 +00:00
py-coards
py-DendroPy
py-dlib science/dlib-cpp and science/py-dlib: Update to 19.20 2020-06-23 14:41:29 +00:00
py-eccodes-python
py-geolinks
py-geomet
py-geometer Update to 0.2.2 2020-02-17 19:43:41 +00:00
py-gpaw Mark BROKEN 2020-05-17 18:33:45 +00:00
py-GPy science/py-GPy: Change to USES=python because it builds fine with python-3.7 2020-04-08 06:35:03 +00:00
py-GPyOpt science/py-GPyOpt: Update 1.2.5 -> 1.2.6 2020-04-08 06:39:07 +00:00
py-gsd
py-h5json
py-h5py
py-kim-query New port: science/py-kim-query: Helper routines for querying the OpenKIM repository 2020-05-03 19:38:33 +00:00
py-kinematics
py-kliff New port: science/py-kliff: KIM-based Learning-Integrated Fitting Framework 2020-05-03 20:58:00 +00:00
py-liac-arff Add py-liac-arff 2.4.0 2020-05-16 10:49:37 +00:00
py-lifelines
py-MDAnalysis Unbreak bulk -a 2020-06-13 15:05:44 +00:00
py-MDAnalysisTests Unbreak bulk -a 2020-06-13 15:05:44 +00:00
py-mdp
py-mlpy Deprecate a few ports 2020-02-23 15:25:53 +00:00
py-mmtf-python
py-molmod science/py-molmod: Update 1.4.7 -> 1.4.8 2020-06-26 01:57:29 +00:00
py-moltemplate science/py-moltemplate: Update 2.17.7 -> 2.17.8 2020-05-29 05:30:36 +00:00
py-netCDF4
py-obspy - Update to 1.2.1 2020-03-12 03:58:15 +00:00
py-oddt
py-OpenFermion science/py-OpenFermion: Update 0.10.0 -> 0.11.0 2020-04-07 21:49:28 +00:00
py-openpiv science/py-openpiv: update to 0.22.0 2020-06-28 11:40:46 +00:00
py-paida
py-paramz
py-phono3py Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas 2020-05-06 16:39:12 +00:00
py-phonopy science/py-phonopy: Update 2.4.2 -> 2.5.0 2020-06-16 16:11:36 +00:00
py-pupynere
py-pyaixi
py-pycsw
py-pydicom - Update to 1.4.2 2020-04-22 08:01:18 +00:00
py-PyFR science/py-PyFR: Update 1.9.0 -> 1.10.0 2020-05-29 05:48:10 +00:00
py-pygeodesy
py-pygeometa
py-pygmo2 Add compiler:c++11-lang to USES to fix build on GCC-based systems: 2020-06-11 11:46:10 +00:00
py-pymatgen - Update WWW 2020-05-26 09:32:48 +00:00
py-pymol pymol fails to build with python 2.7 2020-05-29 08:42:46 +00:00
py-pyosf
py-PyQuante Deprecate a few ports 2020-02-23 15:25:53 +00:00
py-pysal
py-pyteomics Add DF, GRAPHICS, TDA, UNIMOD and XML options 2020-05-21 20:44:52 +00:00
py-qcelemental
py-qcengine Move sysutils/py-cpuinfo -> sysutils/py-py-cpuinfo to match the PyPI name 2020-05-18 18:56:59 +00:00
py-qspin
py-quantities
py-rmf Move devel/swig30 to devel/swig and update to 4.0.1 2020-06-17 18:17:45 +00:00
py-rmsd
py-ruffus
py-scikit-fuzzy science/py-scikit-fuzzy: Change to default python3 2020-05-21 00:20:33 +00:00
py-scikit-learn - Update WWW 2020-06-17 09:35:01 +00:00
py-scikit-optimize Add PLOTS option 2020-04-22 21:28:17 +00:00
py-scikit-sparse
py-scimath
py-scipy science/py-scipy: Unbreak build with GCC 10 2020-07-05 11:02:17 +00:00
py-scoria science/py-scoria: Update 1.0.4 -> 1.0.5 2020-03-28 04:04:51 +00:00
py-SimpleSpectral
py-spglib science/py-spglib: Update 1.14.1 -> 1.15.1 2020-05-30 09:17:34 +00:00
py-tensorflow Bump devel/jsoncpp consumers after r540853. 2020-06-30 17:46:18 +00:00
py-veusz Update py-sip to 4.19.21 and qscintilla2 to 2.11.4 2020-04-11 05:04:40 +00:00
py-ws2300 Deprecate a few ports 2020-02-23 15:25:53 +00:00
pybrain Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 4). 2020-05-27 15:31:55 +00:00
pynn - Update to 0.9.5 2020-02-22 15:05:40 +00:00
qbox Update science/qbox: 1.71.2 -> 1.71.3 2020-06-15 02:53:07 +00:00
qcl
qiskit-aer science/qiskit-aer: Update 0.5.1 -> 0.5.2 2020-06-06 04:41:55 +00:00
qmcpack Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas. 2020-05-06 16:11:14 +00:00
quantum-espresso
quantum-espresso-pseudopotentials
qwalk
R-cran-AMORE math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-bayesm math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-cmprsk - Update to 2.2-10 2020-06-14 12:16:54 +00:00
R-cran-DCluster math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-e1071 math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-eco math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-Epi math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-epicalc math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-etm math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-FAdist math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-fastICA math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-kernlab math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-snow math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-som math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-udunits2 math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
rdkit Convert the tree to use PY_PILLOW 2020-03-24 19:54:57 +00:00
rmf
rubygem-ai4r
rubygem-cdo Update to 1.5.1 2020-05-16 11:04:45 +00:00
rubygem-rgeo
rubygem-rgeo-geojson
rubygem-rgeo-proj4
rubygem-rgeo-shapefile
rubygem-ruby-dcl
rubygem-ruby-netcdf
scidavis science/scidavis: 2020-05-27 20:10:56 +00:00
siesta
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo
simbody Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas 2020-05-06 16:39:12 +00:00
simgrid science/simgrid: Update 3.24 -> 3.25 2020-05-30 06:16:04 +00:00
simint
simlib
simsmith Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 6). 2020-05-28 08:43:29 +00:00
smoldyn
sparta - Update net/openmpi to 4.0.3 (openmpi 1 is deprecated) 2020-04-19 09:49:02 +00:00
spglib science/spglib: Update 1.12.2 -> 1.15.1 2020-05-30 05:58:05 +00:00
step Update KDE's Application (release-service) to 20.04.2 2020-06-13 08:14:07 +00:00
svmlight
szip
teem
tfel
tinker
udunits
v_sim
vipster science/vipster: Update 1.18b-174 -> 1.18b.20200514 (to the current revision) 2020-05-15 03:46:25 +00:00
vmd
voro++
votca science/votca: Update 1.6 -> 1.6.1 2020-06-24 02:07:28 +00:00
wannier90 science/wannier90: Update 3.0.0 -> 3.1.0 2020-03-08 02:34:49 +00:00
wwplot
wxmacmolplt x11-toolkits/wxgtk30: Update to 3.0.5.1 2020-05-17 05:55:12 +00:00
xcrysden science/xcrysden: Update 1.5.60 -> 1.6.2 2020-05-16 20:16:48 +00:00
xdrawchem
xfce4-equake-plugin
xtb science/xtb: Unbreak build with GCC 10 2020-07-04 12:19:38 +00:00
yoda science/yoda: Update 1.8.0 -> 1.8.2 2020-05-26 08:52:41 +00:00
Makefile New port: science/py-pygmo2: Python platform to perform parallel computations of optimisation tasks 2020-06-09 18:53:01 +00:00