mirror of
https://git.FreeBSD.org/ports.git
synced 2024-12-18 03:46:03 +00:00
149 lines
4.7 KiB
Plaintext
149 lines
4.7 KiB
Plaintext
bin/bam2sam
|
|
bin/pbbamify
|
|
bin/pbindex
|
|
bin/pbindexdump
|
|
bin/pbmerge
|
|
include/pbbam/Accuracy.h
|
|
include/pbbam/AlignmentPrinter.h
|
|
include/pbbam/BaiIndexedBamReader.h
|
|
include/pbbam/BamFile.h
|
|
include/pbbam/BamHeader.h
|
|
include/pbbam/BamReader.h
|
|
include/pbbam/BamRecord.h
|
|
include/pbbam/BamRecordBuilder.h
|
|
include/pbbam/BamRecordImpl.h
|
|
include/pbbam/BamRecordTag.h
|
|
include/pbbam/BamRecordView.h
|
|
include/pbbam/BamTagCodec.h
|
|
include/pbbam/BamWriter.h
|
|
include/pbbam/BarcodeQuery.h
|
|
include/pbbam/Cigar.h
|
|
include/pbbam/CigarOperation.h
|
|
include/pbbam/ClipType.h
|
|
include/pbbam/Compare.h
|
|
include/pbbam/CompositeBamReader.h
|
|
include/pbbam/CompositeFastaReader.h
|
|
include/pbbam/Config.h
|
|
include/pbbam/DataSet.h
|
|
include/pbbam/DataSetTypes.h
|
|
include/pbbam/DataSetXsd.h
|
|
include/pbbam/EntireFileQuery.h
|
|
include/pbbam/FastaReader.h
|
|
include/pbbam/FastaSequence.h
|
|
include/pbbam/FastaSequenceQuery.h
|
|
include/pbbam/FastqReader.h
|
|
include/pbbam/FastqSequence.h
|
|
include/pbbam/FrameEncodingType.h
|
|
include/pbbam/Frames.h
|
|
include/pbbam/GenomicInterval.h
|
|
include/pbbam/GenomicIntervalQuery.h
|
|
include/pbbam/IRecordWriter.h
|
|
include/pbbam/IndexedBamWriter.h
|
|
include/pbbam/IndexedFastaReader.h
|
|
include/pbbam/Interval.h
|
|
include/pbbam/LocalContextFlags.h
|
|
include/pbbam/MD5.h
|
|
include/pbbam/MakeUnique.h
|
|
include/pbbam/MoveAppend.h
|
|
include/pbbam/Orientation.h
|
|
include/pbbam/PbiBasicTypes.h
|
|
include/pbbam/PbiBuilder.h
|
|
include/pbbam/PbiFile.h
|
|
include/pbbam/PbiFilter.h
|
|
include/pbbam/PbiFilterQuery.h
|
|
include/pbbam/PbiFilterTypes.h
|
|
include/pbbam/PbiIndexedBamReader.h
|
|
include/pbbam/PbiRawData.h
|
|
include/pbbam/Position.h
|
|
include/pbbam/ProgramInfo.h
|
|
include/pbbam/PulseBehavior.h
|
|
include/pbbam/PulseExclusionReason.h
|
|
include/pbbam/QNameQuery.h
|
|
include/pbbam/QualityValue.h
|
|
include/pbbam/QualityValues.h
|
|
include/pbbam/ReadAccuracyQuery.h
|
|
include/pbbam/ReadGroupInfo.h
|
|
include/pbbam/RecordType.h
|
|
include/pbbam/SamTagCodec.h
|
|
include/pbbam/SamWriter.h
|
|
include/pbbam/SequenceInfo.h
|
|
include/pbbam/Strand.h
|
|
include/pbbam/StringUtilities.h
|
|
include/pbbam/SubreadLengthQuery.h
|
|
include/pbbam/Tag.h
|
|
include/pbbam/TagCollection.h
|
|
include/pbbam/Unused.h
|
|
include/pbbam/Validator.h
|
|
include/pbbam/ZmwGroupQuery.h
|
|
include/pbbam/ZmwQuery.h
|
|
include/pbbam/ZmwType.h
|
|
include/pbbam/ZmwTypeMap.h
|
|
include/pbbam/exception/BundleChemistryMappingException.h
|
|
include/pbbam/exception/InvalidSequencingChemistryException.h
|
|
include/pbbam/exception/ValidationException.h
|
|
include/pbbam/internal/Accuracy.inl
|
|
include/pbbam/internal/BamHeader.inl
|
|
include/pbbam/internal/BamRecord.inl
|
|
include/pbbam/internal/BamRecordBuilder.inl
|
|
include/pbbam/internal/BamRecordImpl.inl
|
|
include/pbbam/internal/BamRecordView.inl
|
|
include/pbbam/internal/Cigar.inl
|
|
include/pbbam/internal/CigarOperation.inl
|
|
include/pbbam/internal/Compare.inl
|
|
include/pbbam/internal/CompositeBamReader.inl
|
|
include/pbbam/internal/CompositeFastaReader.inl
|
|
include/pbbam/internal/DataSet.inl
|
|
include/pbbam/internal/DataSetBaseTypes.h
|
|
include/pbbam/internal/DataSetBaseTypes.inl
|
|
include/pbbam/internal/DataSetElement.h
|
|
include/pbbam/internal/DataSetElement.inl
|
|
include/pbbam/internal/DataSetListElement.h
|
|
include/pbbam/internal/DataSetListElement.inl
|
|
include/pbbam/internal/DataSetTypes.inl
|
|
include/pbbam/internal/FastaSequence.inl
|
|
include/pbbam/internal/FastqSequence.inl
|
|
include/pbbam/internal/Frames.inl
|
|
include/pbbam/internal/GenomicInterval.inl
|
|
include/pbbam/internal/Interval.inl
|
|
include/pbbam/internal/PbiBasicTypes.inl
|
|
include/pbbam/internal/PbiFilter.inl
|
|
include/pbbam/internal/PbiFilterTypes.inl
|
|
include/pbbam/internal/PbiRawData.inl
|
|
include/pbbam/internal/ProgramInfo.inl
|
|
include/pbbam/internal/QualityValue.inl
|
|
include/pbbam/internal/QualityValues.inl
|
|
include/pbbam/internal/QueryBase.h
|
|
include/pbbam/internal/QueryBase.inl
|
|
include/pbbam/internal/ReadGroupInfo.inl
|
|
include/pbbam/internal/SequenceInfo.inl
|
|
include/pbbam/internal/Tag.inl
|
|
include/pbbam/internal/Validator.inl
|
|
include/pbbam/vcf/VcfFile.h
|
|
include/pbbam/vcf/VcfFormat.h
|
|
include/pbbam/vcf/VcfHeader.h
|
|
include/pbbam/vcf/VcfHeaderTypes.h
|
|
include/pbbam/vcf/VcfQuery.h
|
|
include/pbbam/vcf/VcfReader.h
|
|
include/pbbam/vcf/VcfSort.h
|
|
include/pbbam/vcf/VcfVariant.h
|
|
include/pbbam/vcf/VcfWriter.h
|
|
include/pbbam/vcf/internal/VcfFile.inl
|
|
include/pbbam/vcf/internal/VcfHeader.inl
|
|
include/pbbam/vcf/internal/VcfHeaderTypes.inl
|
|
include/pbbam/vcf/internal/VcfVariant.inl
|
|
include/pbbam/virtual/VirtualPolymeraseBamRecord.h
|
|
include/pbbam/virtual/VirtualPolymeraseCompositeReader.h
|
|
include/pbbam/virtual/VirtualPolymeraseReader.h
|
|
include/pbbam/virtual/VirtualRegion.h
|
|
include/pbbam/virtual/VirtualRegionType.h
|
|
include/pbbam/virtual/VirtualRegionTypeMap.h
|
|
include/pbbam/virtual/VirtualZmwBamRecord.h
|
|
include/pbbam/virtual/WhitelistedZmwReadStitcher.h
|
|
include/pbbam/virtual/ZmwReadStitcher.h
|
|
include/pbbam/virtual/ZmwWhitelistVirtualReader.h
|
|
lib/libpbbam.so
|
|
lib/libpbbam.so.0
|
|
lib/libpbbam.so.0.18
|
|
lib/libpbbam.so.0.18.0
|
|
libdata/pkgconfig/pbbam.pc
|