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freebsd-ports/biology
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Kirill Ponomarev 4b76311e47 Fix build on 4.x 
PR:		ports/77697
Submitted by:	Sam Lawrance <boris at brooknet.com.au>
2005-02-19 06:38:25 +00:00
..
act
SIZEify (maintainer timeout)
2004-03-31 03:12:58 +00:00
ariadne
Add ariadne 1.3, programs to compare protein sequences and
2004-06-22 14:29:59 +00:00
artemis
SIZEify (maintainer timeout)
2004-03-31 03:12:58 +00:00
avida
The build should be fixed now, so remove BROKEN mark.
2004-09-23 07:10:32 +00:00
babel
- Remove obsolete MASTER_SITES
2004-06-08 08:19:40 +00:00
biojava
- Update biology/biojava to 1.30
2004-11-22 15:47:58 +00:00
blast
- Distfiles change every few days, so drop md5 checking on them
2004-11-18 07:58:41 +00:00
chemeq
SIZEify (maintainer timeout)
2004-03-31 03:12:58 +00:00
clustalw
…
coalesce
Fix unfetchable tarball, it was renamed and relocated on original
2005-02-18 12:58:07 +00:00
crimap
SIZEify (maintainer timeout)
2004-03-31 03:12:58 +00:00
deft
BROKEN on 5.x: Does not install
2004-09-18 16:35:47 +00:00
distribfold
Drop maintainership
2004-06-24 14:28:12 +00:00
dna-qc
BROKEN on alpha 5.x: does not compile
2004-02-23 03:54:36 +00:00
embassy
- Fix OPTIONS handling
2004-12-11 23:32:32 +00:00
emboss
- Add (or fix) CONFLICTS line. The ports install bin/digest.
2005-02-11 21:11:51 +00:00
fasta
With portmgr hat on, reset inactive maintainer. These ports are now up
2004-11-20 08:09:49 +00:00
fasta3
Chase mastersite and fix checksum to unbreak. (Changes are inclusion of a
2004-07-01 03:02:23 +00:00
fastdnaml
Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.
2004-02-04 05:21:48 +00:00
flip
SIZEify (maintainer timeout)
2004-03-31 03:12:58 +00:00
fluctuate
Readd mistakenly removed patch to honour CC/CFLAGS.
2005-02-18 13:41:09 +00:00
garlic
Make portlint happy by replacing space to tab
2004-05-06 19:49:54 +00:00
genpak
Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.
2004-02-04 05:21:48 +00:00
gff2ps
[PATCH] biology/gff2ps distsite fix
2004-06-01 02:23:41 +00:00
gperiodic
Update to version 2.0.8
2004-12-18 18:48:13 +00:00
grappa
This is now buildable on 5.x, remove BROKEN.
2004-08-17 10:29:40 +00:00
hmmer
- Remove a junk white space.
2004-11-25 22:58:29 +00:00
kinemage
SIZEify (maintainer timeout)
2004-03-31 03:12:58 +00:00
L-Breeder
Bump PORTREVISIONS for all ports that depend on atk or pango to ease in the
2004-11-07 22:37:47 +00:00
lamarc
With portmgr hat on, reset inactive maintainer. These ports are now up
2004-11-20 08:09:49 +00:00
libgenome
Apply a big libtool patch to allow porters to use the libtool installed by
2004-07-09 17:43:11 +00:00
lsysexp
Bump PORTREVISIONS for all ports that depend on atk or pango to ease in the
2004-11-07 22:37:47 +00:00
migrate
Fix build on 4.x
2005-02-19 06:38:25 +00:00
molden
o update to 4.3
2005-01-20 03:44:55 +00:00
mopac
BROKEN on 5.x: Does not install
2004-09-19 01:18:56 +00:00
nab
Minor cleanup.
2004-11-23 09:13:14 +00:00
ncbi-toolkit
- Update to 2004.06.16
2004-11-01 22:21:02 +00:00
nclever
SIZEify (maintainer timeout)
2004-03-31 03:12:58 +00:00
ortep3
- Update MASTER_SITES
2004-06-02 03:32:57 +00:00
p5-AcePerl
- Honor CFLAGS
2004-04-16 08:08:11 +00:00
p5-bioperl
- add missing MAN1 and MAN3
2004-09-03 17:04:38 +00:00
paml
Update to 3.14
2004-11-06 03:55:37 +00:00
phylip
- Add some sites I found with Google, as old master site don't have this
2004-12-09 13:33:55 +00:00
platon
…
povchem
After patching, remove the carriage-return characters from povchem.c
2004-04-07 15:39:34 +00:00
primer3
SIZEify (maintainer timeout)
2004-03-31 03:12:58 +00:00
psi88
- Fix MASTER_SITES
2004-05-23 07:36:35 +00:00
py-biopython
Fix build on Python 2.4
2004-12-02 05:51:25 +00:00
pymol
update to 0.97
2005-02-07 08:39:51 +00:00
rasmol
Update to version 2.7.2.1.1
2004-07-09 18:01:11 +00:00
recombine
With portmgr hat on, reset inactive maintainer. These ports are now up
2004-11-20 08:09:49 +00:00
ruby-bio
Update to 0.6.2.
2004-12-25 17:52:46 +00:00
seaview
- Update to 2004.12.16
2004-12-18 15:14:42 +00:00
seqio
SIZEify (maintainer timeout)
2004-03-31 03:12:58 +00:00
sim4
- Update to version 2003.09.21
2004-03-12 13:53:23 +00:00
t_coffee
- Update to 2.03
2004-11-25 23:03:54 +00:00
tinker
Upgrade to latest revision to make fetchable again.
2004-09-25 08:06:08 +00:00
treepuzzle
- Update to 5.2
2004-07-30 22:02:00 +00:00
treeviewx
Bump PORTREVISIONS for all ports that depend on atk or pango to ease in the
2004-11-07 22:37:47 +00:00
tRNAscan-SE
SIZEify (maintainer timeout)
2004-03-31 03:12:58 +00:00
wise
SIZEify (maintainer timeout)
2004-03-31 03:12:58 +00:00
xdrawchem
Add openbabel dependency (bento log forwarded by kris).
2004-04-09 00:59:36 +00:00
xmolwt
SIZEify (maintainer timeout)
2004-03-31 03:12:58 +00:00
Makefile
As previously announced, remove ports that have reached their expiry date,
2005-02-18 23:44:49 +00:00