mirror of
https://git.FreeBSD.org/ports.git
synced 2025-01-23 09:10:43 +00:00
62 lines
1.4 KiB
Makefile
62 lines
1.4 KiB
Makefile
PORTNAME= bcftools
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PORTVERSION= 1.17
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PORTREVISION= 1
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CATEGORIES= biology
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= Tools for manipulating next-generation sequencing data
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WWW= https://www.htslib.org/
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LICENSE= MIT
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LICENSE_FILE= ${WRKSRC}/LICENSE
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LIB_DEPENDS= libhts.so:biology/htslib
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TEST_DEPENDS= bash:shells/bash
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RUN_DEPENDS= bash:shells/bash
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USES= autoreconf gmake localbase perl5 python:env shebangfix
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USE_GITHUB= yes
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USE_PERL5= test
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GH_ACCOUNT= samtools
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GNU_CONFIGURE= yes
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GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share
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SHEBANG_FILES= misc/* test/test.pl
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OPTIONS_DEFINE= GPL
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GPL_DESC= Enable modules that rely on GPL code
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OPTIONS_DEFAULT= GPL
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GPL_LIB_DEPENDS= libgsl.so:math/gsl
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.include <bsd.port.options.mk>
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.if ${PORT_OPTIONS:MGPL}
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MAKE_ENV+= USE_GPL=1
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LICENSE+= GPLv3
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LICENSE_COMB= multi
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.endif
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TEST_TARGET= test
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pre-configure:
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@${REINPLACE_CMD} -e 's|@PORTVERSION@|${PORTVERSION}|g' \
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${WRKSRC}/configure.ac
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post-install:
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${MV} ${STAGEDIR}${PREFIX}/bin/color-chrs.pl \
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${STAGEDIR}${PREFIX}/bin/color-chrs
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${MV} ${STAGEDIR}${PREFIX}/bin/guess-ploidy.py\
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${STAGEDIR}${PREFIX}/bin/guess-ploidy
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${MV} /${STAGEDIR}${PREFIX}/bin/plot-roh.py \
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${STAGEDIR}${PREFIX}/bin/plot-roh
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${MV} ${STAGEDIR}${PREFIX}/bin/run-roh.pl \
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${STAGEDIR}${PREFIX}/bin/run-roh
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${MV} ${STAGEDIR}${PREFIX}/bin/vcfutils.pl \
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${STAGEDIR}${PREFIX}/bin/vcfutils
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${MV} ${STAGEDIR}${PREFIX}/bin/plot-vcfstats \
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${STAGEDIR}${PREFIX}/bin/
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.include <bsd.port.mk>
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