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freebsd-ports/science
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Steve Wills 256e1796dc - Update to 1.2.1 
- Update URLs of MASTER_SITES
- Add lines related to LICENSE file
- Add math/ruby-gsl to RUN_DEPENDS
- Use PORTDOCS and PORTEXAMPLES
- Trim headers while here

PR:		ports/165487
Submitted by:	Shin-ya Murakami <murashin@gfd-dennou.org> (maintainer)
Feature safe:	yes
2012-10-21 15:13:44 +00:00
..
2d-rewriter
2dhf adjust linking and comments in dependent ports after the math/atlas update; 2011-11-22 11:14:10 +00:00
abinit - update png to 1.5.10 2012-06-01 05:26:28 +00:00
afni s/X11BASE/LOCALBASE/, or equivalent. 2012-06-24 21:53:38 +00:00
avogadro - Detect eigen2 by checking for .pc file, not min. port version. 2012-06-27 01:14:01 +00:00
bddsolve Mark as broken on powerpc. 2011-12-28 06:55:26 +00:00
bft Upgrade Code_Saturne to 2.0. 2012-07-07 15:15:56 +00:00
bodr
brian - Update to 1.4.0 2012-09-04 07:13:08 +00:00
buddy Remove more tags from pkg-descr files fo the form: 2011-10-24 04:17:37 +00:00
cdcl Force numerous ports that fail to build with clang over to instead always 2012-10-09 22:12:13 +00:00
cdf Mark broken on powerpc as well as sparc64. (In fact, on all the tier-2s.) 2011-11-10 05:38:32 +00:00
cdo - Convert to new options framework 2012-06-18 16:41:51 +00:00
cgnslib Upgrade to 3.1.3-4. 2012-07-07 15:15:13 +00:00
checkmol - Reassign to the heap at maintainer's request 2012-10-01 14:45:16 +00:00
chemical-mime-data - update png to 1.5.10 2012-06-01 05:26:28 +00:00
chemtool - update png to 1.5.10 2012-06-01 05:26:28 +00:00
chemtool-devel - update png to 1.5.10 2012-06-01 05:26:28 +00:00
clhep
colt
crf++
dcl - Update to 5.4.5 2012-06-14 05:15:47 +00:00
devisor
dlpoly-classic DL_POLY is a general purpose classical molecular dynamics (MD) simulation 2012-04-17 17:35:33 +00:00
dtiquery
ecs add math/metis4 to math/Makefile; update math/metis to 5.0.2; add appropriate 2012-07-09 11:11:44 +00:00
elmer-eio
elmer-hutiter adjust linking and comments in dependent ports after the math/atlas update; 2011-11-22 11:14:10 +00:00
elmer-matc
elmer-meshgen2d
elmergrid
elmerpost
epte - Update to 2.0.8 2012-08-06 07:19:41 +00:00
euler - update png to 1.5.10 2012-06-01 05:26:28 +00:00
fastcap
fasthenry The vast majority of pkg-descr files had the following format when they 2011-10-24 09:11:38 +00:00
felt
flounder Switch from libglut to freeglut and retire libglut. Libglut hasn't been 2012-08-04 22:52:02 +00:00
fvm Upgrade Code_Saturne to 2.0. 2012-07-07 15:15:56 +00:00
g3data - update png to 1.5.10 2012-06-01 05:26:28 +00:00
gamess Fix typo. 2012-09-14 05:47:44 +00:00
gchemutils - Move libxul 1.9.2 to www/libxul19 2012-09-10 19:19:32 +00:00
gdis - update png to 1.5.10 2012-06-01 05:26:28 +00:00
getdp - update png to 1.5.10 2012-06-01 05:26:28 +00:00
ghemical Switch from libglut to freeglut and retire libglut. Libglut hasn't been 2012-08-04 22:52:02 +00:00
ghmm
gnudatalanguage - update png to 1.5.10 2012-06-01 05:26:28 +00:00
gramps - update png to 1.5.10 2012-06-01 05:26:28 +00:00
gromacs - convert to optionsNG 2012-10-06 20:50:12 +00:00
gsmc - update png to 1.5.10 2012-06-01 05:26:28 +00:00
gsystem - update png to 1.5.10 2012-06-01 05:26:28 +00:00
gtamsanalyzer - reset MAINTAINER 2012-06-26 05:44:19 +00:00
gwyddion - Reassign to the heap at maintainer's request 2012-09-23 22:17:43 +00:00
h5utils - update png to 1.5.10 2012-06-01 05:26:28 +00:00
harminv
hdf Mark as broken on powerpc. 2012-09-08 07:49:05 +00:00
hdf5
hdf5-18 - Update to 1.8.9 2012-06-06 16:45:22 +00:00
hdf-java -Update to 2.8 2012-02-13 05:12:38 +00:00
hs-bio - Teach the Haskell Cabal ports to use the new options framework 2012-08-03 02:30:07 +00:00
InsightToolkit
isaac-cfd
jmol - Trim Makefile headers 2012-10-10 06:48:32 +00:00
jstrack - Update to 3.3.3a 2012-03-18 04:47:23 +00:00
kalzium - Detect eigen2 by checking for .pc file, not min. port version. 2012-06-27 01:14:01 +00:00
kmovisto - update png to 1.5.10 2012-06-01 05:26:28 +00:00
kst - update png to 1.5.10 2012-06-01 05:26:28 +00:00
kst2 Update to 2.0.6 2012-10-11 11:25:19 +00:00
lamprop
libctl
libghemical
libint - Remove WITH_FBSD10_FIX, is no longer needed 2011-11-09 15:26:04 +00:00
libkml Fix typos and make small modifications in COMMENT (according to Porter's 2012-08-03 15:54:35 +00:00
liblinear
liboglappth Switch from libglut to freeglut and retire libglut. Libglut hasn't been 2012-08-04 22:52:02 +00:00
libquantum
libsvm The vast majority of pkg-descr files had the following format when they 2011-10-24 09:11:38 +00:00
libsvm-python The vast majority of pkg-descr files had the following format when they 2011-10-24 09:11:38 +00:00
linsmith - update png to 1.5.10 2012-06-01 05:26:28 +00:00
massxpert - Convert USE_QT_VER=4 and QT_COMPONETS to USE_QT4 2012-06-06 06:44:37 +00:00
mayavi - update png to 1.5.10 2012-06-01 05:26:28 +00:00
mbdyn add math/metis4 to math/Makefile; update math/metis to 5.0.2; add appropriate 2012-07-09 11:11:44 +00:00
mcstas - Remove SITE_PERL from *_DEPENDS 2012-06-30 14:53:22 +00:00
medit Switch from libglut to freeglut and retire libglut. Libglut hasn't been 2012-08-04 22:52:02 +00:00
meep Replace USE_GCC=4.5+ by USE_GCC=4.6+ which has been transparently 2012-04-07 15:31:51 +00:00
mei MEI stands for Mathematical Expression Interpreter. 2012-07-07 15:15:08 +00:00
minc Update to version 1.5.1 [1] 2012-07-20 16:32:07 +00:00
minc2 Update to version 2.0.18 [1] 2012-07-20 16:33:32 +00:00
mol2ps - Reassign to the heap at maintainer's request 2012-10-01 14:45:16 +00:00
mpb adjust linking and comments in dependent ports after the math/atlas update; 2011-11-22 11:14:10 +00:00
mpqc - update png to 1.5.10 2012-06-01 05:26:28 +00:00
mpqc-mpich Fix the two affected ports 2012-02-10 09:33:05 +00:00
ncs Fix on FreeBSD-7.x. 2012-09-08 09:33:14 +00:00
netcdf - Remove WITH_FBSD10_FIX, is no longer needed 2011-11-09 15:26:04 +00:00
netcdf3-ftn
netcdf4
netcdf-ftn
nifticlib - Fix typos in COMMENT 2012-08-02 09:02:43 +00:00
omnetpp - update png to 1.5.10 2012-06-01 05:26:28 +00:00
openbabel - Remove WITH_FBSD10_FIX, is no longer needed 2011-11-09 15:26:04 +00:00
ovt - update png to 1.5.10 2012-06-01 05:26:28 +00:00
p5-Algorithm-SVMLight - Assign clsung's p5- ports to perl@ 2012-05-01 01:47:10 +00:00
p5-Chemistry-3DBuilder - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Bond-Find - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Canonicalize - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-Mopac - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-PDB - Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or 2012-06-10 18:42:48 +00:00
p5-Chemistry-File-SLN - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-SMARTS - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-SMILES - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-VRML - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-XYZ - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-FormulaPattern - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-InternalCoords - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Isotope
p5-Chemistry-MacroMol At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 2012-01-21 17:40:15 +00:00
p5-Chemistry-MidasPattern - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Mok - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Mol
p5-Chemistry-Pattern - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Reaction - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Ring - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Geo-BUFR - Update to 1.21 2012-02-08 07:25:19 +00:00
p5-Geo-Coordinates-Converter - Update to 0.13 2012-10-16 14:19:23 +00:00
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS - Update to 0.010 2012-01-07 17:37:32 +00:00
p5-PerlMol - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Physics-Unit - Update to 0.53 2012-05-26 07:29:57 +00:00
paje - reset MAINTAINER 2012-06-26 05:44:19 +00:00
paraview - Convert USE_QT_VER=4 and QT_COMPONETS to USE_QT4 2012-06-06 06:44:37 +00:00
peekabot - Fix header to proper format 2012-10-01 15:01:14 +00:00
pnetcdf - Update to 1.3.1 2012-09-30 04:19:04 +00:00
psi3 adjust linking and comments in dependent ports after the math/atlas update; 2011-11-22 11:14:10 +00:00
psychopy - update png to 1.5.10 2012-06-01 05:26:28 +00:00
py-biolccc Update to 1.4.0 2012-05-13 12:20:54 +00:00
py-DendroPy Update to 3.12.0 2012-07-18 06:21:15 +00:00
py-h5py
py-hcluster - update png to 1.5.10 2012-06-01 05:26:28 +00:00
py-mdp - Update to 3.2 2012-08-08 21:27:15 +00:00
py-mlpy At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 2012-01-21 17:40:15 +00:00
py-netCDF4 - Update to 1.0.1 2012-10-07 03:55:19 +00:00
py-obspy-core - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.db - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.gse2 - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.imaging - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.iris - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.mseed - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.signal - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.taup - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.wav - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.xseed - Update to 0.7.0 2012-10-10 06:25:58 +00:00
py-openbabel
py-paida
py-pydicom Fix typos and make small modifications in COMMENT (according to Porter's 2012-08-03 15:54:35 +00:00
py-scikit-learn scikit-learn is a Python module integrating classic machine learning 2012-10-19 12:24:00 +00:00
py-scimath At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 2012-01-21 17:40:15 +00:00
py-scipy - update to 0.11.0 2012-10-17 06:15:16 +00:00
py-ws2300
pybrain
pycdf At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 2012-01-21 17:40:15 +00:00
pynn - Update to 0.7.3 2012-04-11 07:17:21 +00:00
qcl Remove more tags from pkg-descr files fo the form: 2011-10-24 04:17:37 +00:00
qtresistors - Convert USE_QT_VER=4 and QT_COMPONETS to USE_QT4 2012-06-06 06:44:37 +00:00
R-cran-AMORE update math/R to 2.15.1, switch to the new options format, and 2012-06-26 23:57:00 +00:00
R-cran-bayesm update math/R to 2.15.1, switch to the new options format, and 2012-06-26 23:57:00 +00:00
R-cran-DCluster update math/R to 2.15.1, switch to the new options format, and 2012-06-26 23:57:00 +00:00
R-cran-e1071 - Update to 1.6-1 2012-09-14 20:06:40 +00:00
R-cran-eco update math/R to 2.15.1, switch to the new options format, and 2012-06-26 23:57:00 +00:00
R-cran-Epi - Update to 1.1.36 2012-06-30 03:31:07 +00:00
R-cran-epicalc - Update to 2.15.1.0 2012-10-11 06:20:40 +00:00
R-cran-snow - Update to 0.3-10 2012-07-16 13:42:19 +00:00
R-cran-som update math/R to 2.15.1, switch to the new options format, and 2012-06-26 23:57:00 +00:00
ruby-dcl - Update to 1.7.0. 2012-07-25 01:23:45 +00:00
ruby-gphys - Update to 1.2.1 2012-10-21 15:13:44 +00:00
ruby-netcdf - update to 0.6.6 2012-03-08 04:34:40 +00:00
rubygem-ai4r
silo Remove QT_COMPONENTS - Qt 3 ports don't use it 2012-09-19 23:57:37 +00:00
simlib
step - Detect eigen2 by checking for .pc file, not min. port version. 2012-06-27 01:14:01 +00:00
svmlight
szip - Update distinfo because distfile was rerolled upstream [1] 2012-02-04 07:44:50 +00:00
udunits - Remove unnecessary USE_PERL5 2012-05-06 09:35:33 +00:00
v_sim - update png to 1.5.10 2012-06-01 05:26:28 +00:00
veusz - update png to 1.5.10 2012-06-01 05:26:28 +00:00
vis5d+ - update png to 1.5.10 2012-06-01 05:26:28 +00:00
vmd Update to 1.9.1. 2012-04-23 04:48:03 +00:00
x11iraf Register CONFLICTS 2012-06-11 09:52:17 +00:00
xmakemol Switch from libglut to freeglut and retire libglut. Libglut hasn't been 2012-08-04 22:52:02 +00:00
xmds The vast majority of pkg-descr files had the following format when they 2011-10-24 09:11:38 +00:00
Makefile scikit-learn is a Python module integrating classic machine learning 2012-10-19 12:24:00 +00:00