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d53b4fb4a1
- Bump PORTREVISION of dependent ports for shlib change Changes: https://github.com/grpc/grpc/releases
82 lines
2.7 KiB
Makefile
82 lines
2.7 KiB
Makefile
PORTNAME= ncbi-blast+
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DISTVERSION= 2.14.1
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PORTREVISION= 5
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CATEGORIES= biology perl5 python
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MASTER_SITES= https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ \
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https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PORTVERSION}/
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DISTNAME= ncbi-blast-${PORTVERSION}+-src
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= NCBI implementation of Basic Local Alignment Search Tool
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WWW= https://blast.ncbi.nlm.nih.gov
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LICENSE= PD
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LICENSE_FILE= ${WRKSRC}/scripts/projects/blast/LICENSE
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ONLY_FOR_ARCHS= aarch64 amd64 powerpc64 powerpc64le riscv64
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ONLY_FOR_ARCHS_REASON= Requires 64-bit processor
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LIB_DEPENDS= libpcre.so:devel/pcre \
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liblmdb.so:databases/lmdb \
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liblzo2.so:archivers/lzo2 \
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libgnutls.so:security/gnutls \
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libtspi.so:security/trousers \
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libgmp.so:math/gmp \
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libidn2.so:dns/libidn2 \
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libnettle.so:security/nettle \
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libhogweed.so:security/nettle \
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libtasn1.so:security/libtasn1 \
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libp11-kit.so:security/p11-kit \
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libgcrypt.so:security/libgcrypt \
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libgpg-error.so:security/libgpg-error \
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libsqlite3.so:databases/sqlite3 \
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libuv.so:devel/libuv \
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libnghttp2.so:www/libnghttp2 \
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libgrpc.so:devel/grpc \
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libzstd.so:archivers/zstd \
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libdw.so:devel/elfutils
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RUN_DEPENDS= p5-List-MoreUtils>=0:lang/p5-List-MoreUtils \
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p5-JSON>=0:converters/p5-JSON
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USES= compiler:c++14-lang gmake localbase:ldflags shebangfix perl5 python
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USE_LDCONFIG= yes
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SHEBANG_FILES= src/app/blast/legacy_blast.pl \
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src/app/blast/update_blastdb.pl \
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src/app/blast/cleanup-blastdb-volumes.py \
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src/app/blast/get_species_taxids.sh \
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src/app/winmasker/windowmasker_2.2.22_adapter.py
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GNU_CONFIGURE= yes
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# configure chooses /usr/local/bin/ar with no flags
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# FreeBSD boost port flagged by configure as untested version
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# --libdir=${PREFIX}/lib/ncbi-tools++ doesn't respect DESTDIR, so do
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# a postinstall mv.
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CONFIGURE_ARGS= AR="ar cr" --without-boost --libdir=${PREFIX}/lib/ncbi-tools++
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CONFLICTS_INSTALL= ncbi-cxx-toolkit
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WRKSRC_SUBDIR= c++
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.if !exists(/usr/include/omp.h)
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CONFIGURE_ARGS+= --without-openmp
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.endif
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.include <bsd.port.pre.mk>
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.if ${CHOSEN_COMPILER_TYPE} == gcc
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# In case of problems: https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=220822
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LDFLAGS+= -latomic # Only exists in gcc libs
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.endif
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post-install:
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@${RM} ${STAGEDIR}${PREFIX}/include/ncbi-tools++/*/*/.cvsignore.extra
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@${RM} -rf ${STAGEDIR}${PREFIX}/lib/X11
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@${RM} ${STAGEDIR}${PREFIX}/include/ncbi-tools++/common/config/ncbiconf_msvc_site.h.in
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@${RM} ${STAGEDIR}${PREFIX}/include/ncbi-tools++/common/ncbi_build_ver.h.in
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@${RM} ${STAGEDIR}${PREFIX}/include/ncbi-tools++/common/ncbi_revision.h.in
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@${RMDIR} ${STAGEDIR}${PREFIX}/lib/debug
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${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/ncbi-tools++/*.so
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.include <bsd.port.post.mk>
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