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freebsd-ports/science
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Dmitry Marakasov 856a020448 - Support staging 
- Use new LIB_DEPENDS syntax
- Don't remove mtree directory

Approved by:	portmgr blanket
2014-05-09 18:27:29 +00:00
..
2d-rewriter Remove trailing whitespaces from category science 2014-02-21 13:39:18 +00:00
2dhf Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
abinit - Bump PORTREVISION for dependency change from science/netcdf-ftn and 2014-05-03 03:54:50 +00:00
afni Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
avogadro Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
bddsolve - Support staging 2014-03-20 09:34:19 +00:00
bft Convert s* to USES=zip 2014-03-10 17:01:36 +00:00
bodr
brian Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
buddy - Stage support 2014-02-21 01:58:34 +00:00
cdcl Support stage 2014-04-07 15:30:00 +00:00
cdf Replace "${OPSYS:tl}" with "freebsd" on 4 ports 2014-05-05 15:04:38 +00:00
cdo - Add missing backslash 2014-05-03 07:59:46 +00:00
cgnslib - Update to 1.8.12 (from science/hdf5-18) 2014-05-03 00:55:30 +00:00
cgribex - Add cgribex 1.6.3 2014-04-29 13:28:31 +00:00
checkmol - Bump PORTREVISION. Freepascal compiler was updated to 2.6.4 2014-03-26 04:04:45 +00:00
chemical-mime-data Stagify, switch to USES=tar:bzip2 and gmake. 2014-04-09 13:17:04 +00:00
chemtool
chemtool-devel science/chemtool-devel: Unbreak on FreeBSD 10+ 2013-12-25 22:08:13 +00:00
clhep Convert all :U to :tu and :L to :tl 2014-05-05 09:45:36 +00:00
colt
crf++ Fix properties on pkg-plist 2014-01-21 23:40:21 +00:00
dcl Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
devisor
dlpoly-classic - Update openmpi from 1.6.5 to 1.8 (new stable version) 2014-04-13 00:17:45 +00:00
dtiquery
ecs - Update to 1.8.12 (from science/hdf5-18) 2014-05-03 00:55:30 +00:00
elmer-eio Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
elmer-hutiter Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
elmer-matc Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
elmer-meshgen2d
elmergrid
elmerpost Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
epte - Stage support 2014-02-06 10:41:38 +00:00
fastcap - Stage support 2014-02-21 05:29:59 +00:00
fasthenry
fisicalab Update core GNUstep libraries and fisicalab to latest versions 2014-01-12 22:54:58 +00:00
fvcom - Bump PORTREVISION for dependency change from science/netcdf-ftn and 2014-05-03 03:54:50 +00:00
fvcom-mpi - Update openmpi from 1.6.5 to 1.8 (new stable version) 2014-04-13 00:17:45 +00:00
fvm - Update to 1.8.12 (from science/hdf5-18) 2014-05-03 00:55:30 +00:00
g3data Consolidate the docbook ports into -sgml and -xml variants. 2014-02-19 14:45:19 +00:00
gamess Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
gchemutils When linking a library libA with a library libB using libtool, if libB.la 2014-04-23 13:25:16 +00:00
getdp Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
ghemical The FreeBSD x11@ and graphics team proudly presents 2014-04-16 18:28:47 +00:00
ghmm Fix properties on pkg-plist 2014-01-21 23:40:21 +00:00
gnudatalanguage - Update to 4.3.2 (from science/netcdf4) 2014-05-03 03:17:19 +00:00
gramps Python cleanup: 2014-01-13 21:00:02 +00:00
gromacs Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
gsmc - Enable staging 2013-12-30 22:50:38 +00:00
gtamsanalyzer
gwyddion The FreeBSD x11@ and graphics team proudly presents 2014-04-16 18:28:47 +00:00
h5utils - Update to 1.8.12 (from science/hdf5-18) 2014-05-03 00:55:30 +00:00
harminv - Support staging 2014-05-09 18:27:29 +00:00
hdf Convert all :U to :tu and :L to :tl 2014-05-05 09:45:36 +00:00
hdf5 - Update to 1.8.12 (from science/hdf5-18) 2014-05-03 00:55:30 +00:00
hdf-java - Update to 1.8.12 (from science/hdf5-18) 2014-05-03 00:55:30 +00:00
hs-bio - Reroll and update bootstrap Haskell compilers to GHC 7.6.3 on 8.x and 2014-03-29 00:52:54 +00:00
InsightToolkit Now when it builds on 10.x, drop maintainership 2013-12-21 00:28:51 +00:00
isaac-cfd Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
jmol - Update to version 13.2.3 [1] 2013-11-07 16:53:33 +00:00
jstrack - Convert to USES=tk 2014-01-14 10:30:24 +00:00
kalzium KDE/FreeBSD team presents KDE SC 4.12.4 and KDE Workspace 4.11.8! 2014-04-03 09:49:10 +00:00
kst2 - Update to 3.360 2014-05-04 15:37:11 +00:00
lamprop
libctl Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
libghemical Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
libint
libkml Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
liblinear Convert s* to USES=zip 2014-03-10 17:01:36 +00:00
liboglappth The FreeBSD x11@ and graphics team proudly presents 2014-04-16 18:28:47 +00:00
libquantum - Stage support 2014-02-03 13:57:46 +00:00
libsvm Convert s* to USES=zip 2014-03-10 17:01:36 +00:00
libsvm-python
linsmith The FreeBSD x11@ and graphics team proudly presents 2014-04-16 18:28:47 +00:00
massxpert The FreeBSD x11@ and graphics team proudly presents 2014-04-16 18:28:47 +00:00
mbdyn Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
mcstas Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
medit - Support staging; 2014-04-24 19:48:33 +00:00
meep - Update to 1.8.12 (from science/hdf5-18) 2014-05-03 00:55:30 +00:00
mei - Upgrade to 1.0.4; 2013-11-26 21:30:22 +00:00
minc - Update to 4.3.2 (from science/netcdf4) 2014-05-03 03:17:19 +00:00
minc2 - Update to 4.3.2 (from science/netcdf4) 2014-05-03 03:17:19 +00:00
mol2ps - Fix typo 2014-03-26 04:18:14 +00:00
mpb - Update to 1.8.12 (from science/hdf5-18) 2014-05-03 00:55:30 +00:00
mpqc support LDFLAGS (fixes libghemical) 2014-03-25 06:30:21 +00:00
mpqc-mpich
ncs The FreeBSD x11@ and graphics team proudly presents 2014-04-16 18:28:47 +00:00
netcdf Fix packaging with default options (without DOXYGEN) 2014-05-03 11:43:26 +00:00
netcdf-cxx - Fix WRKSRC 2014-05-03 14:35:33 +00:00
netcdf-fortran - Fix "make test" 2014-05-09 15:14:28 +00:00
nifticlib Restore r323814 to remove MAKE_JOBS_UNSAFE. 2014-02-20 22:40:14 +00:00
openbabel The FreeBSD x11@ and graphics team proudly presents 2014-04-16 18:28:47 +00:00
openkim Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
p5-Algorithm-SVMLight Support staging. 2014-02-06 14:07:44 +00:00
p5-Chemistry-3DBuilder - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-Bond-Find - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-Canonicalize - add stage support 2014-01-29 17:18:46 +00:00
p5-Chemistry-Elements Support STAGEDIR. 2013-11-06 01:32:11 +00:00
p5-Chemistry-File-MDLMol - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-Mopac - add stage support 2014-01-29 17:18:46 +00:00
p5-Chemistry-File-PDB - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-SLN - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-SMARTS - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-SMILES - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-VRML - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-XYZ - add stage support 2014-01-29 17:18:46 +00:00
p5-Chemistry-FormulaPattern - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-InternalCoords - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-Isotope - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-MacroMol Support STAGEDIR. 2013-11-06 01:32:11 +00:00
p5-Chemistry-MidasPattern - add stage support 2014-01-29 17:18:46 +00:00
p5-Chemistry-Mok - Stage support 2014-02-01 14:41:07 +00:00
p5-Chemistry-Mol Support STAGEDIR. 2013-11-06 01:32:11 +00:00
p5-Chemistry-Pattern - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-Reaction - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-Ring - add stage support 2014-01-29 17:00:41 +00:00
p5-Geo-BUFR Support STAGEDIR. 2013-11-06 01:32:11 +00:00
p5-Geo-Coordinates-Converter Support STAGEDIR. 2013-11-06 01:32:11 +00:00
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB - add stage support 2014-01-29 17:00:41 +00:00
p5-Geo-WebService-Elevation-USGS Support STAGEDIR. 2013-11-06 01:32:11 +00:00
p5-PerlMol - add stage support 2014-01-29 17:00:41 +00:00
p5-Physics-Unit Support staging. 2014-02-06 14:10:06 +00:00
paje
paraview - Update to 1.8.12 (from science/hdf5-18) 2014-05-03 00:55:30 +00:00
pnetcdf - Update openmpi from 1.6.5 to 1.8 (new stable version) 2014-04-13 00:17:45 +00:00
psi3 Mark broken: Fails to build 2014-04-12 22:00:08 +00:00
psychopy - Fix build 2014-03-26 01:12:42 +00:00
py-coards science/py-coards: Modernise and enable STAGE support 2014-01-26 00:52:15 +00:00
py-DendroPy
py-h5py - Update to 1.8.12 (from science/hdf5-18) 2014-05-03 00:55:30 +00:00
py-hcluster Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
py-mdp Convert all :U to :tu and :L to :tl 2014-05-05 09:45:36 +00:00
py-mlpy Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
py-netCDF4 - Update to 4.3.2 (from science/netcdf4) 2014-05-03 03:17:19 +00:00
py-obspy Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
py-paida
py-pupynere Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
py-pyaixi Python cleanup: 2014-01-13 21:00:02 +00:00
py-pydap Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
py-pydicom
py-scikit-learn Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
py-scimath Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
py-scipy - Update LICENSE 2014-04-26 18:15:14 +00:00
py-ws2300
pybrain Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
pycdf - Update to 4.3.2 (from science/netcdf4) 2014-05-03 03:17:19 +00:00
pynn Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
pyteomics science/pyteomics: 2014-04-03 10:10:18 +00:00
pyteomics.biolccc Use PYDISTUTILS_AUTOPLIST 2014-01-23 08:42:15 +00:00
qcl
qtresistors - Convert to USES=qmake (and other USES while I'm here) 2013-11-22 12:55:00 +00:00
R-cran-AMORE Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
R-cran-bayesm Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
R-cran-DCluster Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
R-cran-e1071 - Update 1.6-3 2014-03-21 06:12:29 +00:00
R-cran-eco Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
R-cran-Epi Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
R-cran-epicalc Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
R-cran-snow Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
R-cran-som Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
ruby-dcl Allow packaging as user 2014-04-07 15:31:03 +00:00
ruby-gphys Support stage 2014-04-07 15:36:57 +00:00
ruby-netcdf - Update to 4.3.2 (from science/netcdf4) 2014-05-03 03:17:19 +00:00
rubygem-ai4r
rubygem-netcdf - Update to 4.3.2 (from science/netcdf4) 2014-05-03 03:17:19 +00:00
sigrok-cli Undeprecate by depending on any version of python 3 rather than deprecated 2014-04-14 18:14:54 +00:00
silo - Update to 1.8.12 (from science/hdf5-18) 2014-05-03 00:55:30 +00:00
simlib
step KDE/FreeBSD team presents KDE SC 4.12.4 and KDE Workspace 4.11.8! 2014-04-03 09:49:10 +00:00
svmlight Fix properties on pkg-plist 2014-01-21 23:40:21 +00:00
szip - Add my LOCAL to MASTER_SITES 2014-04-29 13:28:25 +00:00
udunits - Update to 2.2.11 2014-04-26 18:11:29 +00:00
v_sim - Update to 4.3.2 (from science/netcdf4) 2014-05-03 03:17:19 +00:00
veusz Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
vmd - Update to 4.3.2 (from science/netcdf4) 2014-05-03 03:17:19 +00:00
voro++ - Update to 0.4.6 2014-02-21 10:29:52 +00:00
x11iraf
xfce4-equake-plugin - Fix checksum 2014-04-27 15:10:34 +00:00
xmakemol The FreeBSD x11@ and graphics team proudly presents 2014-04-16 18:28:47 +00:00
xmds
Makefile - Remove science/netcdf-ftn, science/netcdf3-ftn and science/netcdf4 2014-05-03 03:32:49 +00:00