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mirror of https://git.FreeBSD.org/ports.git synced 2024-11-22 00:35:15 +00:00
freebsd-ports/biology
Nicola Vitale c8a6af0499 - Fix *_DEPENDS after the repocopy of databases/py-sqlalchemy
(This port doesn't yet support SQLAlchemy 0.7.X)
- Bump PORTREVISION
2011-06-25 07:21:20 +00:00
..
adun Update math/gsl to 1.15, and adjust PORTREVISION 2011-05-09 16:42:27 +00:00
ariadne
artemis
avida
babel
belvu
biococoa
biojava
blast
blat
boinc-simap
chemeq
clustalw
consed
crimap Another bunch of deprecation: no more public distfiles and/or abandonware 2011-06-16 10:43:58 +00:00
crux
distribfold deprecate and set expiration date: 2011-06-08 16:15:45 +00:00
dna-qc
dotter - Updated WWW: to a working link 2011-04-22 18:59:11 +00:00
embassy Bump PORTREVISION after open-mofit update 2011-05-02 12:44:53 +00:00
emboss Bump PORTREVISION after open-mofit update 2011-05-02 12:44:53 +00:00
fasta
fasta3
fastdnaml
finchtv
fluctuate
garlic Update to 1.6. Web site has been moved. 2011-05-11 05:55:27 +00:00
genpak
gff2ps
gmap
gperiodic
grappa
hmmer
iolib
jalview
kinemage Another bunch of deprecation: no more public distfiles and/or abandonware 2011-06-16 17:33:07 +00:00
L-Breeder Another bunch of deprecation: no more public distfiles and/or abandonware 2011-06-16 10:43:58 +00:00
lagan
lamarc
libgenome
libsbml
linux-foldingathome
lsysexp Another bunch of deprecation: no more public distfiles and/or abandonware 2011-06-16 10:43:58 +00:00
mafft
mapm3
migrate
molden
mopac
mrbayes
mummer
muscle
ncbi-toolkit Fix build with open-motif-2.3.3 2011-05-02 12:41:44 +00:00
njplot Bump PORTREVISION after open-mofit update 2011-05-02 12:44:53 +00:00
ortep3
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Das
p5-Bio-Das-Lite - Update to 2.11 2011-05-08 17:06:15 +00:00
p5-Bio-GFF3 - Update to 0.5 2011-06-10 08:12:40 +00:00
p5-Bio-Glite
p5-Bio-Graphics - update to 2.24 2011-06-01 20:21:51 +00:00
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-bioperl
p5-bioperl-run
paml
phd2fasta
phrap
phred
phylip
phyml
platon
povchem Switch dependency on povray to povray-meta port. 2011-06-20 22:32:03 +00:00
primer3
protomol
psi88
py-biopython - Update to 1.57 2011-05-24 09:06:29 +00:00
pycogent - Fix *_DEPENDS after the repocopy of databases/py-sqlalchemy 2011-06-25 07:21:20 +00:00
pyfasta - Update to 0.4.3 2011-06-02 01:38:55 +00:00
pymol update to 1.4.1 2011-05-09 04:36:54 +00:00
python-nexus
rasmol
recombine
ruby-bio
seaview
seqio
sim4
ssaha
t_coffee
tinker
treepuzzle
treeviewx
tRNAscan-SE
velvet Update to 1.1.04 2011-06-09 16:33:21 +00:00
wise
xdrawchem
xmolwt
Makefile Bio::GFF3 are low-level, fast functions for parsing GFF version 3 files. 2011-04-22 08:51:24 +00:00