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8aaa665368
bioinformatics applications. This allows various applications to be used with common Bioperl objects. WWW: http://bioperl.org/ PR: ports/93675 Submitted by: Mauricio Herrera Cuadra <mauricio@arareko.net>
384 lines
19 KiB
Plaintext
384 lines
19 KiB
Plaintext
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/restover.pm
|
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/restrict.pm
|
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/revseq.pm
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/rnadistance.pm
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/rnaeval.pm
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/rnafold.pm
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/rnaga.pm
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/rnaheat.pm
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/rnainverse.pm
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/rnapdist.pm
|
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/rnasubopt.pm
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/sam2hmmer.pm
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/sampleseqs.pm
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/saps.pm
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/satellites.pm
|
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/scan_for_matches.pm
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/scope.pm
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/scopparse.pm
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/seqboot.pm
|
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/seqgen.pm
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/seqmatchall.pm
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/seqsblast.pm
|
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/seqstat.pm
|
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/showalign.pm
|
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/showfeat.pm
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/showorf.pm
|
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/showseq.pm
|
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/shuffleseq.pm
|
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/sigcleave.pm
|
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/siggen.pm
|
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/sigscan.pm
|
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/silent.pm
|
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/sirna.pm
|
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/splitter.pm
|
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/sreformat.pm
|
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/stretcher.pm
|
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/stride.pm
|
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%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/stssearch.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/supermatcher.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/syco.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/tacg.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/tfscan.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/tipdate.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/tmap.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/toppred.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/tranalign.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/transeq.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/treealign.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/trimest.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/trimseq.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/trnascan.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/twofeat.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/unroot.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/vectorstrip.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/water.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/weighbor.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/whichdb.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/wise2.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/wobble.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/wordcount.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/wordmatch.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/wublast2.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/xblast.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/PiseApplication/xpound.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/PiseJob.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/PiseJobParser.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/PiseWorkflow.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/Primate.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/Primer3.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/Prints.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/Profile.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/Promoterwise.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/Pseudowise.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/RepeatMasker.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/Seg.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/Signalp.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/Tmhmm.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/TribeMCL.pm
|
|
%%SITE_PERL%%/Bio/Tools/Run/Vista.pm
|
|
%%DATADIR%%/scripts/bioperl_application_installer.PLS
|
|
%%DATADIR%%/scripts/panalysis.PLS
|
|
%%DATADIR%%/scripts/papplmaker.PLS
|
|
%%DATADIR%%/scripts/run_neighbor.PLS
|
|
%%DATADIR%%/scripts/run_protdist.PLS
|
|
%%PORTDOCS%%%%DOCSDIR%%/AUTHORS
|
|
%%PORTDOCS%%%%DOCSDIR%%/Changes
|
|
%%PORTDOCS%%%%DOCSDIR%%/INSTALL.PROGRAMS
|
|
%%PORTDOCS%%%%DOCSDIR%%/README
|
|
%%EXAMPLESDIR%%/pise/blast-kun.pl
|
|
%%EXAMPLESDIR%%/pise/blast2.pl
|
|
%%EXAMPLESDIR%%/pise/clustalw.pl
|
|
%%EXAMPLESDIR%%/pise/dnadist.data
|
|
%%EXAMPLESDIR%%/pise/dnadist.pl
|
|
%%EXAMPLESDIR%%/pise/genscan.pl
|
|
%%EXAMPLESDIR%%/pise/needle.pl
|
|
%%EXAMPLESDIR%%/pise/phylo-kun.pl
|
|
%%EXAMPLESDIR%%/pise/toppred.pl
|
|
@dirrm %%EXAMPLESDIR%%/pise
|
|
@dirrm %%EXAMPLESDIR%%
|
|
%%PORTDOCS%%@dirrm %%DOCSDIR%%
|
|
@dirrm %%DATADIR%%/scripts
|
|
@dirrm %%DATADIR%%
|
|
@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio
|
|
@dirrm %%SITE_PERL%%/Bio/Tools/Run/PiseApplication
|
|
@dirrm %%SITE_PERL%%/Bio/Tools/Run/Phylo/Phylip
|
|
@dirrm %%SITE_PERL%%/Bio/Tools/Run/Phylo/PAML
|
|
@dirrm %%SITE_PERL%%/Bio/Tools/Run/Phylo/Molphy
|
|
@dirrm %%SITE_PERL%%/Bio/Tools/Run/Phylo/Forester
|
|
@dirrm %%SITE_PERL%%/Bio/Tools/Run/Phylo
|
|
@dirrm %%SITE_PERL%%/Bio/Tools/Run/AnalysisFactory
|
|
@dirrm %%SITE_PERL%%/Bio/Tools/Run/Analysis
|
|
@dirrm %%SITE_PERL%%/Bio/Tools/Run/Alignment
|
|
@dirrmtry %%SITE_PERL%%/Bio/Tools/Run
|
|
@dirrmtry %%SITE_PERL%%/Bio/Tools
|
|
@dirrm %%SITE_PERL%%/Bio/Installer
|
|
@dirrmtry %%SITE_PERL%%/Bio/Factory
|
|
@dirrmtry %%SITE_PERL%%/Bio
|