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freebsd-ports/biology
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Max Brazhnikov ffd97a0193 - convert USE_CMAKE to USES 
- while here clean up some ports from CMAKE_VERBOSE, which is intended
  for users

Approved by:	portmgr (miwi)
2013-03-22 20:06:14 +00:00
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adun
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ariadne
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artemis
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avida
- convert USE_CMAKE to USES
2013-03-22 20:06:14 +00:00
babel
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biococoa
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biojava
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blast
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blat
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boinc-simap
Remove compatibility with FreeBSD 7.X
2013-03-06 23:31:58 +00:00
chemeq
Convert USE_BISON to USES= bison
2013-03-08 11:32:11 +00:00
clustalw
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consed
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crux
- adoption of optionsNG
2013-03-18 06:48:55 +00:00
dotter
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embassy
- adopt optionsNG
2013-03-18 23:35:01 +00:00
emboss
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fasta
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fasta3
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fastdnaml
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finchtv
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fluctuate
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garlic
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genpak
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gff2ps
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gmap
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gperiodic
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grappa
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hmmer
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iolib
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jalview
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lagan
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lamarc
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libgenome
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libsbml
- adoption of optionsNG
2013-03-18 06:50:12 +00:00
linux-foldingathome
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mafft
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mapm3
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migrate
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molden
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mopac
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mrbayes
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mummer
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muscle
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ncbi-toolkit
- Update to 2012.06.20
2013-03-14 05:27:58 +00:00
njplot
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ortep3
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p5-AcePerl
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p5-Bio-ASN1-EntrezGene
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p5-Bio-Das
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p5-Bio-Das-Lite
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p5-Bio-GFF3
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p5-Bio-Glite
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p5-Bio-Graphics
Add missing item to pkg-plist reported by QAT but not reported by poudriere.
2013-03-03 15:22:43 +00:00
p5-Bio-MAGETAB
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p5-Bio-NEXUS
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p5-Bio-Phylo
- Update to 0.52 [1]
2013-02-16 14:58:51 +00:00
p5-Bio-SCF
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p5-bioperl
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p5-bioperl-run
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paml
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phd2fasta
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phrap
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phred
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phylip
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phyml
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platon
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plink
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plinkseq
Fix build with protobuf-2.5.0
2013-03-21 14:09:22 +00:00
povchem
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primer3
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protomol
- adoption of optionsNG
2013-03-18 06:54:39 +00:00
psi88
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py-biopython
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pycogent
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pyfasta
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pymol
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python-nexus
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rasmol
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recombine
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ruby-bio
- adoption of optionsNG
2013-03-18 06:55:42 +00:00
seaview
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seqan
- convert USE_CMAKE to USES
2013-03-22 20:06:14 +00:00
seqio
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sim4
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ssaha
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t_coffee
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tinker
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treepuzzle
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treeviewx
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tRNAscan-SE
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ugene
Unbreak on 7.X and i386 systems.
2013-02-25 13:00:15 +00:00
velvet
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wise
- Update to 2.4.1
2013-03-02 14:50:25 +00:00
xdrawchem
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xmolwt
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Makefile
Add Unipro UGENE, a free open-source crowss-platform bioinformatics software.
2013-02-23 04:50:48 +00:00