mirror/freebsd-ports
1
0
Fork 0
mirror of https://git.FreeBSD.org/ports.git synced 2025-02-06 11:41:52 +00:00
Code Issues Releases Activity
freebsd-ports/biology
History
John Marino a7ff4d0e9c biology/embassy: specify post-extraction with ${TAR} 
It's possible that EXTRACT_CMD won't be predefined in the near future
in order to support distfiles in multiple formats.  We know the post-
extraction tool needs to be tar, so let's specify it directly.

This port needs staging. It doesn't like like a quick job so I'm leaving
that to the listed maintainer.

Approved by:	infrastructure improvements blanket
Approved by:	portmgr (implicit) (to skip stage check)
2014-05-29 10:47:58 +00:00
..
ariadne
…
artemis
Support stage
2014-01-20 23:06:48 +00:00
avida
…
babel
Support stage
2014-01-15 22:44:13 +00:00
biococoa
…
biojava
Unbreak
2014-03-08 16:39:01 +00:00
blast
Multiple ports: reset maintainers
2014-05-26 02:33:38 +00:00
blat
Convert b* to USES=zip
2014-03-07 15:52:40 +00:00
boinc-simap
Drop maintainership BOINC ports, old machine running them gave up.
2014-02-04 17:54:29 +00:00
chemeq
Stage support
2014-01-18 15:55:42 +00:00
clustalw
Multiple ports: reset maintainers
2014-05-26 02:33:38 +00:00
consed
Replace maintainer's email address with one that seems to work
2014-05-10 18:07:52 +00:00
crux
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
embassy
biology/embassy: specify post-extraction with ${TAR}
2014-05-29 10:47:58 +00:00
emboss
Convert all :U to :tu and :L to :tl
2014-05-05 09:45:36 +00:00
fasta
- Add staging support
2014-03-24 09:01:39 +00:00
fasta3
biology/fasta3: Checked new distfile and regenerated distinfo to unbreak
2014-03-02 10:58:50 +00:00
fastdnaml
Support staging
2014-02-16 11:32:43 +00:00
fluctuate
Support staging
2014-02-16 11:35:00 +00:00
garlic
- Convert USE_GMAKE to USES
2014-03-13 07:41:34 +00:00
gff2ps
Add staging support
2014-03-23 17:43:41 +00:00
gmap
…
gperiodic
Add staging support
2014-03-23 18:09:23 +00:00
grappa
…
hmmer
…
iolib
- Update to version 1.13.5
2014-04-26 02:35:37 +00:00
jalview
Fix properties on pkg-plist
2014-01-21 23:18:05 +00:00
lagan
…
lamarc
…
libsbml
- Update to 5.10.0
2014-05-13 07:04:17 +00:00
linux-foldingathome
…
mafft
- Update to 7.149
2014-05-20 19:35:30 +00:00
mapm3
…
migrate
- Stagify; cleanup Makefile and reorder the knobs a bit
2014-01-29 12:08:29 +00:00
molden
Catch a couple of missing convertsion to :tu/:tl
2014-05-05 11:15:53 +00:00
mopac
- Add staging support
2014-03-23 18:10:41 +00:00
mrbayes
…
mummer
- Convert USE_GMAKE to USES
2014-03-13 07:41:34 +00:00
muscle
Convert to USES=dos2unix
2014-05-26 06:55:07 +00:00
ncbi-toolkit
Add staging support
2014-03-23 20:50:54 +00:00
njplot
Remove trailing whitespaces from category biology
2014-02-21 13:35:26 +00:00
ortep3
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
p5-AcePerl
- Stage support
2014-02-10 06:56:52 +00:00
p5-Bio-ASN1-EntrezGene
…
p5-Bio-Das
…
p5-Bio-Das-Lite
- fix pkg-plist
2014-01-30 07:34:25 +00:00
p5-Bio-GFF3
- Fix PLIST
2014-03-26 14:23:09 +00:00
p5-Bio-Glite
…
p5-Bio-Graphics
Mark as broken unstaged perl ports
2014-04-09 09:49:02 +00:00
p5-Bio-MAGETAB
- update to 1.31
2014-05-16 13:33:02 +00:00
p5-Bio-NEXUS
- Stage support
2014-01-31 12:47:06 +00:00
p5-Bio-Phylo
…
p5-Bio-SCF
…
p5-bioperl
Mark as broken unstaged perl ports
2014-04-09 09:49:02 +00:00
p5-bioperl-run
Remove trailing whitespaces from category biology
2014-02-21 13:35:26 +00:00
paml
- Update to 4.8
2014-04-05 10:56:52 +00:00
phd2fasta
Replace maintainer's email address with one that seems to work
2014-05-10 18:07:52 +00:00
phrap
Replace maintainer's email address with one that seems to work
2014-05-10 18:07:52 +00:00
phred
Replace maintainer's email address with one that seems to work
2014-05-10 18:07:52 +00:00
phylip
The FreeBSD x11@ and graphics team proudly presents
2014-04-16 18:28:47 +00:00
phyml
- Stage support
2014-01-31 12:32:55 +00:00
platon
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
plink
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
plinkseq
Convert to dos2unix
2014-03-07 11:37:35 +00:00
povchem
…
primer3
Quote ${CC} and similar variables in MAKE_ARGS.
2014-05-20 19:32:39 +00:00
protomol
The FreeBSD x11@ and graphics team proudly presents
2014-04-16 18:28:47 +00:00
psi88
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
py-biopython
- Stage
2014-04-27 01:59:47 +00:00
pycogent
- Stage support [1]
2014-05-02 14:00:13 +00:00
pyfasta
- Update to 0.5.2
2014-04-06 04:05:43 +00:00
pymol
The FreeBSD x11@ and graphics team proudly presents
2014-04-16 18:28:47 +00:00
python-nexus
- Convert to PYDISTUTILS_AUTOPLIST
2014-01-31 12:30:39 +00:00
recombine
- Support staging
2014-02-16 11:39:42 +00:00
ruby-bio
Support stage
2014-04-07 13:01:26 +00:00
seaview
- Update to 4.5.1
2014-05-21 05:40:53 +00:00
seqan
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
seqio
Support staging
2014-02-16 11:42:09 +00:00
seqtools
biology/seqtools: 4.25 -> 4.26, fix broken distinfo by upgrading
2014-05-02 19:00:04 +00:00
sim4
Support staging
2014-02-16 11:43:07 +00:00
ssaha
biology/ssaha: undeprecate, this port fetches and builds fine.
2014-03-09 09:39:50 +00:00
t_coffee
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
tinker
- Un-break fetch stage: the name scheme of the source tarballs has changed
2014-04-22 19:28:18 +00:00
treepuzzle
…
treeviewx
Unbreak
2014-03-28 00:08:03 +00:00
tRNAscan-SE
Support stage
2014-05-05 10:26:15 +00:00
ugene
Update to version 1.13.1.
2014-03-07 07:39:20 +00:00
velvet
- Convert USE_GMAKE to USES
2014-03-13 07:41:34 +00:00
wise
- Add staging support
2014-03-24 10:46:35 +00:00
xmolwt
Add staging support
2014-03-24 11:06:56 +00:00
Makefile
Remove expired ports:
2014-04-18 11:17:45 +00:00