Baptiste Daroussin 44e9f64a27 Convert LIB_DEPENDS for ports depending on boost		2013-12-12 14:15:03 +00:00
..
2d-rewriter
2dhf
abinit
afni	Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1;	2013-11-13 08:19:34 +00:00
avogadro	Convert LIB_DEPENDS for ports depending on boost	2013-12-12 14:15:03 +00:00
bddsolve	Convert LIB_DEPENDS for ports depending on boost	2013-12-12 14:15:03 +00:00
bft
bodr
brian
buddy
cdcl
cdf
cdo
cgnslib
checkmol
chemical-mime-data
chemtool
chemtool-devel
clhep
colt
crf++
dcl
devisor
dlpoly-classic
dtiquery
ecs
elmer-eio
elmer-hutiter
elmer-matc	Mark deprecated with a deadline of 33 days from today since this is	2013-11-25 00:38:48 +00:00
elmer-meshgen2d
elmergrid
elmerpost	Mark deprecated with a deadline of 33 days from today since this is	2013-11-25 00:43:10 +00:00
epte
euler
fastcap
fasthenry
felt
fisicalab
flounder
fvcom
fvcom-mpi
fvm
g3data
gamess	uncomment MANUAL_PACKAGE_BUILD.	2013-11-29 01:45:50 +00:00
gchemutils	Add patch to unbreak with libc++ 10.0+.	2013-12-03 22:10:25 +00:00
gdis
getdp
ghemical
ghmm
gnudatalanguage	- Upgrade to 1.3.18.	2013-11-30 15:08:05 +00:00
gramps
gromacs	science/gromacs: Update to version 4.6.4	2013-11-26 17:45:42 +00:00
gsmc
gtamsanalyzer
gwyddion	- Bump dependent ports' revisions (graphics/ilmbase and graphics/OpenEXR)	2013-11-20 14:25:28 +00:00
h5utils
harminv
hdf
hdf5
hdf5-18	- Fix PKGNAME collision	2013-12-11 18:38:53 +00:00
hdf-java	- Convert to dos2unix.mk	2013-11-19 23:08:44 +00:00
hs-bio
InsightToolkit
isaac-cfd
jmol	- Update to version 13.2.3 [1]	2013-11-07 16:53:33 +00:00
jstrack
kalzium
kst2	Add patches to fix build on 10 and head	2013-12-09 15:08:42 +00:00
lamprop
libctl
libghemical
libint
libkml	- Take maintainership	2013-11-10 07:10:14 +00:00
liblinear
liboglappth
libquantum
libsvm
libsvm-python
linsmith
massxpert
mbdyn
mcstas
medit
meep
mei	- Upgrade to 1.0.4;	2013-11-26 21:30:22 +00:00
minc
minc2	Mark as broken: does not build with newer hdf5 version:	2013-12-06 11:44:48 +00:00
mol2ps
mpb
mpqc
mpqc-mpich
ncs
netcdf	- Fix PKGNAME collision	2013-11-06 17:34:52 +00:00
netcdf3-ftn	- Fix PKGNAME collision	2013-11-06 17:35:50 +00:00
netcdf4	- Use CONFLICTS_INSTALL instead of CONFLICTS	2013-12-10 19:17:08 +00:00
netcdf-ftn	- Remove LATEST_LINK	2013-12-10 19:18:39 +00:00
nifticlib
openbabel	Add upstream patch to fix the build with libc++.	2013-11-13 15:49:25 +00:00
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements	Support STAGEDIR.	2013-11-06 01:32:11 +00:00
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol	Support STAGEDIR.	2013-11-06 01:32:11 +00:00
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol	Support STAGEDIR.	2013-11-06 01:32:11 +00:00
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR	Support STAGEDIR.	2013-11-06 01:32:11 +00:00
p5-Geo-Coordinates-Converter	Support STAGEDIR.	2013-11-06 01:32:11 +00:00
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS	Support STAGEDIR.	2013-11-06 01:32:11 +00:00
p5-PerlMol
p5-Physics-Unit
paje
paraview
peekabot	Convert LIB_DEPENDS for ports depending on boost	2013-12-12 14:15:03 +00:00
pnetcdf
psi3
psychopy
py-coards
py-DendroPy
py-h5py	science/py-h5py: update to 2.2.0	2013-11-13 21:28:29 +00:00
py-hcluster
py-mdp
py-mlpy
py-netCDF4	- Convert to dos2unix.mk	2013-11-19 23:08:44 +00:00
py-obspy	- Fix build with distribute -> setuptools change	2013-11-27 19:21:00 +00:00
py-paida
py-pupynere
py-pyaixi	science/py-pyaixi: Implementation of the MC-AIXI-CTW AI algorithm	2013-12-08 14:12:47 +00:00
py-pydap	science/py-pydap: update to 3.1.1	2013-11-29 11:40:24 +00:00
py-pydicom
py-scikit-learn	Use PYDISTUTILS_AUTOPLIST.	2013-11-05 12:37:28 +00:00
py-scimath	- Update WWW:	2013-11-20 20:51:25 +00:00
py-scipy	- Fix distinfo	2013-11-18 15:36:42 +00:00
py-ws2300
pybrain
pycdf
pynn
pyteomics	Update to 2.2.1	2013-11-29 11:57:18 +00:00
pyteomics.biolccc	- Update WWW:	2013-11-20 20:51:25 +00:00
qcl
qtresistors	- Convert to USES=qmake (and other USES while I'm here)	2013-11-22 12:55:00 +00:00
R-cran-AMORE	Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).	2013-11-27 18:56:43 +00:00
R-cran-bayesm	Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).	2013-11-27 18:56:43 +00:00
R-cran-DCluster	Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).	2013-11-27 18:56:43 +00:00
R-cran-e1071	Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).	2013-11-27 18:56:43 +00:00
R-cran-eco	Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).	2013-11-27 18:56:43 +00:00
R-cran-Epi	Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).	2013-11-27 18:56:43 +00:00
R-cran-epicalc	Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).	2013-11-27 18:56:43 +00:00
R-cran-snow	Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).	2013-11-27 18:56:43 +00:00
R-cran-som	Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).	2013-11-27 18:56:43 +00:00
ruby-dcl
ruby-gphys
ruby-netcdf
rubygem-ai4r
silo
simlib
step	Add my upstream commit that fixes the build with libc++.	2013-11-03 22:48:12 +00:00
svmlight
szip
udunits
v_sim
veusz
vmd
voro++
x11iraf
xfce4-equake-plugin
xmakemol
xmds
Makefile	science/py-pyaixi: Implementation of the MC-AIXI-CTW AI algorithm	2013-12-08 14:12:47 +00:00