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80 lines
2.2 KiB
Makefile
80 lines
2.2 KiB
Makefile
# Created by: Tony Maher <tonym@biolateral.com.au>
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# $FreeBSD$
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PORTNAME= wise
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PORTVERSION= 2.4.1
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CATEGORIES= biology
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MASTER_SITES= http://www.ebi.ac.uk/~birney/wise2/
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DISTNAME= ${PORTNAME}${PORTVERSION}
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MAINTAINER= ports@FreeBSD.org
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COMMENT= Intelligent algorithms for DNA searches
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OPTIONS_DEFINE= DOCS EXAMPLES
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BUILD_WRKSRC= ${WRKSRC}/src
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USES= pkgconfig
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USE_GNOME= glib20
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MAKEFILE= makefile
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SUB_FILES= pkg-message
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PORTDOCS= *
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PORTEXAMPLES= *
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PLIST_FILES= ${BINFILES:S,^,bin/,} ${DATAFILES:S,^,%%DATADIR%%/,}
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PLIST_DIRS= %%DATADIR%%
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#
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# Actually want an 'ALL_TARGET = all perl' which then requires
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# 'USE_PERL5= yes' but the perl sub-build is currently broken.
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# The perl stuff is only so you can use the base libraries/functions
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# from perl scripts. This is extra, independent functionality for the
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# port and not required for the base system which are C applications.
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# When the perl part is fixed, it will require an install line
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# something like '@cd ${WRKSRC}/perl/Wise2; ${MAKE} install'
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#
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BINFILES= dba dnal estwise estwisedb genewise genewisedb promoterwise \
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psw pswdb scanwise scanwise_server
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DATAFILES= BLOSUM30.bla BLOSUM45.bla BLOSUM62.bla BLOSUM80.bla aa.rnd \
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cb.tmf codon.table gene.stat gon120.bla gon160.bla \
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gon200.bla gon250.bla gon350.bla human.gf human.gp \
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human.stats idenity.bla methods pb.gf pombe.gf tm.pri \
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wise.2 wise.per worm.gf
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NO_STAGE= yes
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.include <bsd.port.options.mk>
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post-patch:
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@${FIND} ${BUILD_WRKSRC} -name "makefile" | ${XARGS} \
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${REINPLACE_CMD} -e \
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's|^CC =|CC ?=| ; \
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s|^CFLAGS =|CFLAGS +=| ; \
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s|-O[0-9] | | ; \
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s|-g | | ; \
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s|-g[0-9] | | ; \
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s|-lpthread|-pthread| ; \
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s|glib-config|pkg-config glib-2.0| ; \
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/welcome.csh/s|^|#|'
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do-install:
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.for i in ${BINFILES}
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(cd ${BUILD_WRKSRC}/bin && ${INSTALL_PROGRAM} ${i} ${PREFIX}/bin)
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.endfor
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@${MKDIR} ${DATADIR}
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.for i in ${DATAFILES}
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(cd ${WRKSRC}/wisecfg && ${INSTALL_DATA} ${i} ${DATADIR})
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.endfor
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.if ${PORT_OPTIONS:MDOCS}
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@${MKDIR} ${DOCSDIR}
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@(cd ${WRKSRC}/docs && ${COPYTREE_SHARE} . ${DOCSDIR})
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.endif
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.if ${PORT_OPTIONS:MEXAMPLES}
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@${MKDIR} ${EXAMPLESDIR}
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@(cd ${WRKSRC}/test_data && ${COPYTREE_SHARE} . ${EXAMPLESDIR})
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.endif
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@${CAT} ${PKGMESSAGE}
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.include <bsd.port.mk>
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