..
ariadne
artemis
avida
mark some of the ports that don't build on powerpc64 for me
2015-12-13 16:07:27 +00:00
babel
Unbreak the build on PowerPC (at least) by always using va_copy() macro for
2015-09-02 10:10:06 +00:00
bcftools
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
bedtools
The bedtools utilities are a suite of tools for performing a wide range of
2016-01-19 08:56:34 +00:00
biococoa
Make all GNUstep ports install into the System domain so that the Local domain is available for stuff built from source.
2015-09-19 10:33:34 +00:00
biojava
blat
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
bowtie
New port: biology/bowtie.
2016-03-05 13:21:26 +00:00
bowtie2
New port: biology/bowtie2.
2016-03-23 11:22:39 +00:00
bwa
mark some of the ports that don't build on powerpc64 for me
2015-12-13 16:07:27 +00:00
cd-hit
- Update maintainer mail address
2015-12-11 08:48:56 +00:00
cdbfasta
- Update maintainer mail address
2015-12-11 08:48:56 +00:00
chemeq
- Add LICENSE
2016-04-10 11:24:32 +00:00
clustalw
consed
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
crux
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
emboss
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
fasta
- Do not falsely advertise that PowerPC build runs out of space and fails
2015-09-02 10:35:25 +00:00
fasta3
- Update to 36.3.8
2015-10-16 13:31:10 +00:00
fastdnaml
Convert LICENSE= "GPLxx # or later" to "GPLxx+"
2016-01-12 16:20:31 +00:00
fastool
- Update maintainer mail address
2015-12-11 08:48:56 +00:00
fasttree
- Update maintainer mail address
2015-12-11 08:48:56 +00:00
fastx-toolkit
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
fluctuate
- Switch to options helpers
2015-11-19 00:51:15 +00:00
garlic
gff2ps
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
gmap
mark some of the ports that don't build on powerpc64 for me
2015-12-13 16:07:27 +00:00
gperiodic
grappa
biology/grappa: define license (GPLv2)
2015-09-25 18:55:08 +00:00
hmmer
- Update maintainer mail address
2015-12-11 08:48:56 +00:00
htslib
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
iolib
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
jalview
jellyfish
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
lagan
Remove deprecated PLIST_DIRSTRY and also no longer needed PLIST_DIRS
2016-01-09 18:26:40 +00:00
lamarc
Cleanup GH_* and variables order.
2015-12-29 14:30:46 +00:00
libgtextutils
Cleanup GH_* and variables order.
2015-12-29 14:30:46 +00:00
libsbml
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
linux-foldingathome
mafft
- Update to 7.266
2015-12-25 07:19:00 +00:00
mapm3
biology/mapm3: document ncurses rqmt (USES+=ncurses), respect LDFLAGS
2016-02-01 22:09:10 +00:00
migrate
- Update options
2015-06-28 15:30:41 +00:00
molden
biology/molden: updated distfile, take maintainer
2016-01-20 19:31:52 +00:00
mopac
Convert LICENSE= "GPLxx # or later" to "GPLxx+"
2016-01-12 16:20:31 +00:00
mrbayes
mummer
Fix build on mips by properly respecting compiler and flags
2015-08-05 12:18:41 +00:00
muscle
mark some of the ports that don't build on powerpc64 for me
2015-12-13 16:07:27 +00:00
ncbi-blast+
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
ncbi-toolkit
p5-AcePerl
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
p5-Bio-ASN1-EntrezGene
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
p5-Bio-Das
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
p5-Bio-Das-Lite
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
p5-Bio-GFF3
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
p5-Bio-Glite
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
p5-Bio-Graphics
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
p5-Bio-MAGETAB
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
p5-Bio-NEXUS
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
p5-Bio-Phylo
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
p5-Bio-SCF
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
p5-bioperl
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
p5-bioperl-run
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
p5-transdecoder
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
paml
phrap
phred
phylip
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
phyml
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
platon
- Mark BROKEN: checksum mismatch:
2015-11-29 03:13:34 +00:00
plink
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
plinkseq
- Update maintainer mail address
2015-12-11 08:48:56 +00:00
primer3
protomol
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
psi88
py-biopython
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
pycogent
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
pyfasta
python-nexus
- Update to 1.34
2016-02-12 13:18:37 +00:00
recombine
ruby-bio
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
samtools
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
seaview
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
seqan
seqio
seqtools
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
sim4
slclust
New port: biology/slclust.
2016-03-23 11:00:44 +00:00
ssaha
t_coffee
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
2016-04-01 13:29:15 +00:00
tinker
Convert ports to use the options helpers in categories [abc]*, and minor fixes.
2015-08-19 13:29:59 +00:00
treepuzzle
treeviewx
Convert LICENSE= "GPLxx # or later" to "GPLxx+"
2016-01-12 16:20:31 +00:00
trimmomatic
Trimmomatic performs a variety of useful trimming tasks for illumina
2016-03-17 08:21:14 +00:00
tRNAscan-SE
ugene
Update to version 1.22.0, which now unfortunately requires Qt 5.x. Also
2016-04-14 04:07:44 +00:00
vcftools
New port: biology/vcftools.
2016-02-26 17:07:59 +00:00
velvet
wise
xmolwt
Fix previous commit.
2015-08-19 13:41:51 +00:00
Makefile
Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.
2016-03-24 13:53:06 +00:00