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mirror of https://git.FreeBSD.org/ports.git synced 2024-12-15 03:14:23 +00:00
freebsd-ports/science
2021-12-17 16:18:50 +08:00
..
2d-rewriter
abinit
afni science/afni: update to 21.3.10 2021-12-09 10:06:08 +01:00
agrum science/agrum: Update 0.22.0 -> 0.22.1 2021-09-13 15:28:57 -07:00
aircraft-datcom
ALPSCore
antioch science/metaphysicl: Update 1.3.1 -> 1.3.2 2021-11-25 13:46:02 -08:00
apbs
ascent science/ascent: New port: Visualization and analysis runtime for multi-physics HPC simulations 2021-09-16 09:46:15 -07:00
atompaw
avogadro2
avogadrolibs
axom science/axom: Broken on i386 2021-12-07 00:58:36 -08:00
bagel
bddsolve
berkeleygw
bodr
buddy
cantera science/cantera: Fix handling of Python versions 2021-09-19 20:08:25 -07:00
cdcl
cdf
cdk
cdo science/cdo: Update to 2.0.0 2021-11-06 07:53:48 +08:00
cgnslib
cgribex
checkmol
chemical-mime-data INSTALLS_ICONS: retire the macro and rework the related dependencies 2021-10-10 21:44:42 +02:00
chemps2
chemtool
chemtool-devel
chrono
clhep
clipper
code_saturne science/code_saturne: upgrade to 7.0.2 2021-10-18 22:17:32 +02:00
colt
conduit science/conduit: Add dependencies 2021-09-16 12:48:34 -07:00
coordgenlibs science/coordgenlibs: Update 2.0.3 -> 3.0.0 2021-09-09 13:00:09 -07:00
cp2k
cp2k-data
crf++
csvtk science/csvtk: Update to 0.24.0 2021-11-30 18:00:16 -06:00
dakota science/dakota: fix build on non-x86 2021-10-22 11:42:25 +00:00
dalton
dcl
devisor
dftbplus
dkh
dlib-cpp
drawxtl
dvc
dynare science/dynare: fix build on non-amd64 64-bit architectures 2021-10-08 01:25:19 +00:00
eccodes science/eccodes: Update to 2.23.0 2021-09-22 06:23:22 +08:00
elk
elmerfem math/vtk9: Update 9.0.3 -> 9.1.0 2021-11-22 01:40:34 -08:00
epte *: Return culot@'s ports to the pool (and perl@) after safekeeping his bit. 2021-09-06 23:13:27 +02:00
erd
ergo
erkale math/armadillo: Update to 10.6.2 2021-09-21 10:25:15 +01:00
erkale-pseudopotentials
fastcap
fasthenry
fastjet
fisicalab
frontistr
fsom
fvcom
fvcom-mpi *: Clean up some things 2021-10-12 17:01:38 +02:00
gabedit INSTALLS_ICONS: retire the macro and rework the related dependencies 2021-10-10 21:44:42 +02:00
gamess-us
gchemutils INSTALLS_ICONS: retire the macro and rework the related dependencies 2021-10-10 21:44:42 +02:00
gdma
getdp science/getdp: Update to 3.4.0. 2021-09-24 12:35:11 -05:00
ghemical
ghmm
gnudatalanguage science/gnudatalanguage: prepare to proj8 2021-11-18 06:17:26 +01:00
gpaw-setups
gramps INSTALLS_ICONS: retire the macro and rework the related dependencies 2021-10-10 21:44:42 +02:00
grib_api
gromacs science/gromacs: Update 2021.3 -> 2021.4 2021-11-08 01:05:21 -08:00
gsmc
gtamsanalyzer
h5utils
h5z-zfp
harminv
hdf
hdf5 science/hdf5: Add CPE information 2021-10-14 12:26:24 +02:00
hdf5-18 science/hdf5-18: Add CPE information 2021-10-14 12:26:39 +02:00
healpix
helfem math/armadillo: Update to 10.6.2 2021-09-21 10:25:15 +01:00
hepmc3
highfive
hypre science/hypre: fix build on powerpc64* 2021-11-07 12:15:02 +00:00
iboview
InsightToolkit
isaac-cfd
jdftx
jmol science/jmol: Update 14.31.61 -> 14.31.62 2021-11-25 11:50:29 -08:00
jstrack
kalzium KDE: Update KDE Gear to 21.12 2021-12-10 07:26:32 +01:00
kim-api many: Depend on vim instead of vim-console 2021-09-02 12:09:29 -06:00
kst2
lammps science/lammps: Update patch_2Jul2021 -> stable_29Sep2021 2021-09-30 10:30:10 -07:00
lamprop
latte
libaec science/libaec: Update to 1.0.6 2021-09-28 03:48:08 +08:00
libccp4
libcint science/libcint: Update 4.4.4 -> 4.4.6 2021-10-16 15:21:14 -07:00
libctl
libecpint science/libecpint: Update 1.0.6 -> 1.0.7 2021-12-14 14:41:53 -08:00
libefp
libgeodecomp
libghemical science/libghemical: Remove LD_PRELOAD vecause it configured now without it 2021-09-26 10:43:55 -07:00
libgridxc
libint
libint2 science/libint2: Update 2.6.0 -> 2.7.1 2021-11-06 16:56:36 -07:00
libkml
liblinear
libmsym
liboglappth *: fix tab vs. space issues, and comments according to the guide. 2021-10-16 11:51:39 +02:00
libquantum
libssm
libsvm *: Clean up some things 2021-10-12 17:01:38 +02:00
libsvm-python
libvdwxc
libxc
liggghts
linux-zotero science/linux-zotero: Clean up 2021-11-08 00:33:54 +01:00
luscus
madness
maeparser
massxpert
mbdyn science/mbdyn: fix build on powerpc64* 2021-11-08 15:52:33 +00:00
mcstas
mcstas-comps
mcxtrace
mcxtrace-comps
mdynamix
medit
metaphysicl science/metaphysicl: Update 1.3.2 -> 1.3.3 2021-12-13 09:19:09 -08:00
minc2 */*: Remove redundant '-[0-9]*' from CONFLICTS 2021-10-29 11:50:18 +02:00
mmdb2
mmtf-cpp
mol2ps
molgif
molscript
molsketch
mpb
mpqc science/mpqc: regen plist after doxygen update (+) 2021-12-16 11:49:52 +03:00
msms Style: improve ONLY_FOR_ARCHS_REASON (grammar, markup, etc.) 2021-10-25 12:58:29 +00:00
multiwfn
namd Style: improve ONLY_FOR_ARCHS_REASON (grammar, markup, etc.) 2021-10-25 12:58:29 +00:00
nest science/nest: Update 2.20.1 -> 3.1 2021-10-20 23:23:16 -07:00
netcdf
netcdf-cxx
netcdf-fortran
nifticlib */*: Remove redundant '-[0-9]*' from CONFLICTS 2021-10-29 11:50:18 +02:00
nwchem science/nwchem: Update 7.0.2.20211109 -> 7.0.2.20211110 2021-11-12 11:02:09 -08:00
nwchem-data
octopus
openbabel */*: Remove redundant '-*' from CONFLICTS definitions 2021-11-25 22:40:11 +01:00
openems science/openems: Only works on amd64 and powerpc64. 2021-11-14 16:31:37 +01:00
openkim
openkim-models many: Depend on vim instead of vim-console 2021-09-02 12:09:29 -06:00
openmc science/openmc: Unbreak LIBMESH option by switching to mpich 2021-10-12 13:52:17 -07:00
openmx science/openmx: Cleanup - remove unnecessary lines 2021-09-05 10:00:44 -07:00
opensim-core
opensph misc/openvdb: Update 8.1.0 -> 9.0.0 2021-11-14 21:18:52 -08:00
opsin
orthanc devel/jsoncpp: Update to 1.9.4 -> 1.9.5 2021-11-05 12:09:19 -07:00
orthanc-dicomweb devel/jsoncpp: Update to 1.9.4 -> 1.9.5 2021-11-05 12:09:19 -07:00
orthanc-mysql devel/jsoncpp: Update to 1.9.4 -> 1.9.5 2021-11-05 12:09:19 -07:00
orthanc-postgresql devel/jsoncpp: Update to 1.9.4 -> 1.9.5 2021-11-05 12:09:19 -07:00
orthanc-webviewer devel/jsoncpp: Update to 1.9.4 -> 1.9.5 2021-11-05 12:09:19 -07:00
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements science/p5-Chemistry-Elements: Update to 1.075 2021-11-06 03:15:55 +08:00
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-WebService-Elevation-USGS science/p5-Geo-WebService-Elevation-USGS: Update to 0.120 2021-11-06 03:15:56 +08:00
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit *: Return culot@'s ports to the pool (and perl@) after safekeeping his bit. 2021-09-06 23:13:27 +02:00
packmol
pagmo2 devel/onetbb: Update to 2021.4.0 2021-10-10 17:11:27 +02:00
paje
pcmsolver
PETSc
phonopy
plumed many: Depend on vim instead of vim-console 2021-09-02 12:09:29 -06:00
pnetcdf
pulseview INSTALLS_ICONS: retire the macro and rework the related dependencies 2021-10-10 21:44:42 +02:00
py-abipy
py-access
py-asdf science/py-asdf: Update USES=python 2021-11-06 03:14:23 +08:00
py-ase
py-avogadrolibs
py-cdo
py-chainer
py-chainer-chemistry
py-chempy science/py-chempy: Update 0.8.1 -> 0.8.2 2021-09-21 10:47:02 -07:00
py-cirq-aqt
py-cirq-core science/py-cirq-core: Update 0.12.0 -> 0.13.1 2021-11-14 16:27:22 -08:00
py-cirq-google science/py-cirq-google: Update 0.12.0 -> 0.13.0 2021-10-17 08:49:41 -07:00
py-cirq-ionq science/py-cirq-ionq: Update 0.12.0 -> 0.13.1 2021-10-31 10:23:17 -07:00
py-cirq-pasqal science/py-cirq-pasqal: Update 0.13.0 -> 0.13.1 2021-10-31 10:23:18 -07:00
py-coards
py-DendroPy
py-dipy
py-dlib
py-eccodes science/py-eccodes: Add NO_ARCH 2021-11-02 05:28:49 +08:00
py-esda science/py-esda: Add SHAPE option 2021-09-21 11:44:54 +08:00
py-geolinks
py-geomet
py-geometer science/py-geometer: Fix 89c2dfb9ad 2021-11-01 21:41:50 +08:00
py-geometric
py-gpaw
py-GPy
py-GPyOpt
py-gsd science/py-gsd: Update 2.4.2 -> 2.5.0 2021-10-14 13:08:01 -07:00
py-h5json
py-h5py science/py-h5py: Update to 3.6.0 2021-11-22 05:15:52 +08:00
py-hiphive
py-inequality science/py-inequality: Update USES=python 2021-11-06 03:14:23 +08:00
py-jupyter_jsmol
py-kim-query
py-kinematics science/py-kinematics: Update USES=python 2021-11-06 03:14:24 +08:00
py-kliff
py-liac-arff
py-libpysal
py-lifelines
py-MDAnalysis
py-MDAnalysisTests
py-mdp
py-mmtf-python
py-molmod
py-moltemplate
py-netCDF4 science/py-netCDF4: Update version 1.3.1=>1.5.7 2021-10-10 10:32:52 -05:00
py-netcdf-flattener
py-nibabel
py-nilearn science/py-nilearn: Update 0.8.0 -> 0.8.1 2021-09-18 10:48:28 -07:00
py-obspy
py-oddt
py-OpenFermion science/py-OpenFermion: Update 1.1.0 -> 1.2.0 2021-10-22 01:57:02 -07:00
py-OpenMC science/py-OpenMC: New port: Monte Carlo neutron and photon transport simulation code (Python) 2021-10-11 08:51:36 -07:00
py-openpiv science/py-openpiv: update to 0.23.8 2021-11-06 00:17:44 +03:00
py-paida
py-paramz
py-phono3py
py-phonopy
py-PubChemPy
py-pupynere science/py-pupynere: Update USES=python 2021-11-06 03:14:24 +08:00
py-pyaixi
py-pyberny science/py-pyberny: New port: Optimizer of molecular geometries with respect to the total energy 2021-10-16 16:56:19 -07:00
py-pycsw science/py-pycsw: Update to 2.6.1 2021-10-25 23:57:35 +08:00
py-pydicom science/py-pydicom: Update to 2.2.2 2021-10-12 14:58:13 +08:00
py-PyFR science/py-PyFR: Update 1.12.2 -> 1.12.3 2021-11-21 16:50:13 -08:00
py-pygeodesy science/py-pygeodesy: Update to 21.9.16 2021-09-22 06:23:38 +08:00
py-pygeometa science/py-pygeometa: Update to 0.8.0 2021-09-21 11:44:55 +08:00
py-pygmo2
py-pyked devel/py-pint: Update to 0.18 2021-11-01 21:41:43 +08:00
py-pymatgen science/py-pymatgen: Update 2022.0.14 -> 2022.0.15 2021-10-22 08:58:25 -07:00
py-pymol
py-PyNE science/py-PyNE: Add the moab dependency; Install the nuc_data.h5 file; Build in parallel 2021-10-10 11:49:56 -07:00
py-pyosf
py-pysal science/py-pysal: Update to 2.5.0 2021-09-19 14:00:21 +08:00
py-pyscf science/py-pyscf: Update 2.0.0a-103 -> 2.0.1 2021-11-16 14:41:36 -08:00
py-pyteomics science/py-pyteomics: Update to 4.5 2021-09-22 06:23:38 +08:00
py-qcelemental science/py-qcelemental: Update 0.23.0 -> 0.24.0 2021-11-19 13:33:17 -08:00
py-qcengine science/py-qcengine: Update 0.20.1 -> 0.21.0 2021-11-26 21:26:07 -08:00
py-qspin
py-quantities
py-rmf *: apply refactor.remove-consecutive-empty-lines 2021-10-19 10:36:47 +02:00
py-rmsd
py-ruffus
py-scikit-fuzzy
py-scikit-learn
py-scikit-optimize science/py-scikit-optimize: Update to 0.9.0 2021-10-25 23:57:36 +08:00
py-scikit-sparse science/py-scikit-sparse: Update 0.4.5 -> 0.4.6 2021-09-13 15:28:57 -07:00
py-scimath
py-scipy science/py-scipy: Update to 1.7.1 2021-11-08 11:08:59 +08:00
py-scoria
py-segregation science/py-segregation: Update to 2.1.0 2021-09-21 11:44:55 +08:00
py-segyio science/{,py-}segyio: Update 1.9.7 -> 1.9.8 2021-11-06 16:56:38 -07:00
py-SimpleSpectral
py-skrebate science/py-skrebate: Update USES=python 2021-11-06 03:14:24 +08:00
py-spaghetti science/py-spaghetti: Update to 1.6.4 2021-09-27 23:56:01 +08:00
py-spglib
py-tensorflow devel/jsoncpp: Update to 1.9.4 -> 1.9.5 2021-11-05 12:09:19 -07:00
py-tobler
py-veusz
pybrain
pynn science/pynn: Update to 0.10.0 2021-12-17 16:18:50 +08:00
qbox science/qbox: 1.73.2 -> 1.73.3 2021-08-20 22:56:24 -07:00
qcl
qiskit-aer
qmcpack
quantum-espresso
quantum-espresso-pseudopotentials
qwalk
R-cran-AMORE
R-cran-bayesm
R-cran-cmprsk
R-cran-DCluster
R-cran-e1071 science/R-cran-e1071: Update to 1.7-9 2021-09-18 13:18:14 +00:00
R-cran-eco
R-cran-Epi
R-cran-epicalc
R-cran-etm
R-cran-FAdist
R-cran-fastICA science/R-cran-fastICA: Update to 1.2-3 2021-09-25 18:13:13 -04:00
R-cran-kernlab
R-cran-snow science/R-cran-snow: Update to 0.4-4 2021-10-28 10:20:03 +00:00
R-cran-som
R-cran-udunits2 science/R-cran-udunits2: Update to 0.13.1 2021-11-06 13:18:07 +00:00
rdkit science/coordgenlibs: Update 2.0.3 -> 3.0.0 2021-09-09 13:00:09 -07:00
rmf
rubygem-ai4r
rubygem-cdo
rubygem-rgeo
rubygem-rgeo-geojson
rubygem-rgeo-proj4 science/rubygem-rgeo-proj4: Update to 3.1.1 2021-11-22 02:24:31 +08:00
rubygem-rgeo-shapefile
rubygem-ruby-dcl
rubygem-ruby-netcdf
scidavis
segyio science/{,py-}segyio: Update 1.9.7 -> 1.9.8 2021-11-06 16:56:38 -07:00
shelxle science/shelxle: Update 1.0.1346 -> 1.0.1348 2021-12-14 14:41:46 -08:00
siconos cleanup: drop support for EOL FreeBSD 11.X 2021-09-30 23:23:30 +02:00
siesta
sigrok-cli INSTALLS_ICONS: retire the macro and rework the related dependencies 2021-10-10 21:44:42 +02:00
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo
simbody
simgrid
simint
simlib
simsmith
smoldyn science/smoldyn: Update 2.66 -> 2.67 2021-11-06 16:56:37 -07:00
sparta science/sparta: Update 26Feb2021 -> 20Oct2021 2021-10-20 23:23:15 -07:00
spglib
step KDE: Update KDE Gear to 21.12 2021-12-10 07:26:32 +01:00
svmlight science/svmlight: fix build on 13.0+ 2021-10-29 18:01:10 +00:00
szip
teem
tfel
tfel-edf
thermofun
tinker science/tinker: Update 8.9.5 -> 8.10.1 2021-10-11 08:51:36 -07:00
udunits
v_sim INSTALLS_ICONS: retire the macro and rework the related dependencies 2021-10-10 21:44:42 +02:00
vipster
vmd
voro++
votca science/votca: Update 2021.2 -> 2021.2-18560 2021-09-28 17:49:03 -07:00
wannier90
wwplot
wxmacmolplt
xcfun
xcrysden framework: Add new USES 'magick' for graphics/ImageMagick* 2021-12-11 14:50:53 +01:00
xdrawchem
xtb science/xtb: update to 6.4.1 2021-11-27 11:49:53 -06:00
yoda science/yoda: Update 1.9.0 -> 1.9.1 2021-09-12 10:27:25 -07:00
Makefile science/linux-zotero: Add new port 2021-11-03 17:20:36 +01:00