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Numerous bug fixes and enhancements since 1.9: https://github.com/samtools/htslib/tags Bump PORTREVISION on dependents that don't require additional patching PR: 248089
51 lines
1.3 KiB
Makefile
51 lines
1.3 KiB
Makefile
# $FreeBSD$
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PORTNAME= vcflib
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DISTVERSIONPREFIX= v
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DISTVERSION= 1.0.0-rc1-130
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PORTREVISION= 1
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DISTVERSIONSUFFIX= -g7e3d806
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CATEGORIES= biology
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= C++ library and CLI tools for parsing and manipulating VCF files
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LICENSE= MIT
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BROKEN_aarch64= fails to compile: mmintrin.h:47:5: use of undeclared identifier '__builtin_ia32_emms'; did you mean '__builtin_isless'?
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LIB_DEPENDS= libhts.so:biology/htslib \
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libtabix.so:biology/tabixpp \
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libsw.so:biology/smithwaterman
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COMMON_DEPENDS= fastahack:biology/fastahack \
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filevercmp:sysutils/filevercmp \
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fsom:science/fsom \
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multichoose>=1.0.3:math/multichoose \
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interval_tree_test:math/intervaltree
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BUILD_DEPENDS= ${COMMON_DEPENDS}
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RUN_DEPENDS= ${COMMON_DEPENDS}
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USES= gmake shebangfix
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USE_LDCONFIG= yes
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USE_GITHUB= yes
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GH_ACCOUNT= ekg
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CXXFLAGS+= -I${LOCALBASE}/include/smithwaterman \
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-I${LOCALBASE}/include/multichoose \
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-I${LOCALBASE}/include/filevercmp \
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-I${LOCALBASE}/include/fastahack \
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-I${LOCALBASE}/include/intervaltree \
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-DVERSION='\"${PORTVERSION}\"'
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# Clang and GCC disable sse2 by default on i386, but it's required for vcflib
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CFLAGS_i386= -msse2
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MAKEFILE= ${FILESDIR}/Makefile.external-libs
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INSTALL_TARGET= install-strip
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post-install:
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${RLN} ${STAGEDIR}${PREFIX}/lib/libvcflib.so.1 \
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${STAGEDIR}${PREFIX}/lib/libvcflib.so
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.include <bsd.port.mk>
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