Joseph Mingrone a875dde83e biology/paml: Update to 4.10.6 ... https://github.com/abacus-gene/paml/releases/tag/v4.10.6 Sponsored by: The FreeBSD Foundation		2022-11-12 22:35:29 -04:00
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abyss
ad2vcf
artemis
avida
babel
bamtools
bamutil
bbmap
bcftools
bedtools
bfc
bio-mocha
bioawk
biococoa
biolibc
biolibc-tools
bioparser
biosig	biology/biosig: Make sure __LITTLE_ENDIAN is defined in include files.	2022-10-26 20:42:44 -05:00
biosoup	biology/biosoup: Update g20201216 -> 0.10.0-2	2022-10-10 23:10:56 -07:00
biostar-tools
bolt-lmm
bowtie
bowtie2	biology/bowtie2: fix build on powerpc64*	2022-11-09 23:50:41 +01:00
bwa
canu
cd-hit
cdbfasta
checkm
clustal-omega
clustalw
cufflinks
cytoscape
ddocent
diamond
dsr-pdb
edlib
emboss
erminej
exonerate
fasta
fasta3
fastahack
fastdnaml
fastool
fastp
fastq-trim
fastqc
fasttree
fastx-toolkit
figtree
flash
fluctuate
freebayes
garlic
gatk
gcta
gemma
generand
gff2ps
gffread
gmap
gperiodic
graphlan
groopm
haplohseq
hhsuite
hisat2
hmmer	biology/hmmer: Update to 3.3.2	2022-10-11 15:13:01 -05:00
htslib
hyphy
igv
infernal	biology/infernal: Update to 1.1.4	2022-10-12 11:15:54 +01:00
iolib
iqtree
jalview	biology/jalview: Update 2.11.1.4 -> 2.11.2.5	2022-10-11 23:58:18 -07:00
jellyfish
kallisto
kmcp
lamarc
libbigwig
libcombine	biology/libcombine: New port: C++ library for working with the COMBINE archive format	2022-10-21 00:05:07 -07:00
libgff
libgtextutils
libneurosim
libnuml
libsbml
libsedml
linux-foldingathome
mafft
mapm3
migrate
minimap2
mmseqs2
molden
mothur
mrbayes
mummer
muscle
ncbi-blast+
ncbi-cxx-toolkit
ncbi-entrez-direct
ncbi-toolkit	*/*: Bump PORTREVISION for consumers of libunistring	2022-10-22 11:36:07 +02:00
ncbi-vdb
ngs-sdk
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Cluster
p5-Bio-Coordinate
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-DB-EMBL
p5-Bio-DB-NCBIHelper
p5-Bio-FeatureIO
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-Bio-Variation
p5-BioPerl
p5-BioPerl-Run
p5-transdecoder
p5-TrimGalore
paml	biology/paml: Update to 4.10.6	2022-11-12 22:35:29 -04:00
pbbam
pbseqan
peak-classifier
pear-merger
phrap
phred
phyml
picard-tools
plink
pooler
primer3
prodigal
prodigy-lig
protomol
psi88
py-bcbio-gff
py-biom-format
py-biopython
py-bx-python
py-crossmap
py-cutadapt
py-deeptools
py-deeptoolsintervals
py-dna-features-viewer
py-dnaio
py-ete3
py-Genesis-PyAPI
py-gffutils
py-goatools
py-gtfparse
py-hits
py-libnuml
py-libsedml
py-loompy
py-macs2
py-mrcfile
py-multiqc
py-ont-fast5-api
py-orange3-bioinformatics
py-orange3-single-cell
py-pandas-charm
py-py2bit
py-pybigwig
py-pyfaidx
py-pysam	biology/py-pysam: Update 0.19.1 -> 0.20.0	2022-11-10 09:36:45 -08:00
py-PySCeS
py-python-libsbml
py-pywgsim
py-resdk
py-scikit-bio
py-valerius
py-xenaPython
pyfasta
python-nexus
rainbow
rampler
readseq
recombine
ruby-bio
rubygem-bio
rubygem-bio-executables
rubygem-bio-old-biofetch-emulator
rubygem-bio-shell
sam2pairwise
samtools
scrm
seaview
seqan
seqan1
seqan3
seqan-apps
seqio
seqkit
seqtk
sigviewer
sim4
slclust
smithwaterman
snpeff
spoa
sra-tools
stacks
star
stringtie
subread
tabixpp
taxonkit
treekin
treepuzzle
trimadap
trimmomatic
tRNAscan-SE	biology/tRNAscan-SE: Update to 2.0.11	2022-10-12 12:45:24 +01:00
ucsc-userapps
ugene
unikmer
vcf2hap
vcf-split
vcflib
vcftools
velvet
viennarna
vsearch
vt
wise
Makefile	biology/libcombine: New port: C++ library for working with the COMBINE archive format	2022-10-21 00:05:07 -07:00