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10 lines
535 B
Plaintext
10 lines
535 B
Plaintext
Spoa (SIMD POA) is a c++ implementation of the partial order alignment (POA)
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algorithm (as described in 10.1093/bioinformatics/18.3.452) which is used to
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generate consensus sequences. It supports three alignment modes: local
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(Smith-Waterman), global (Needleman-Wunsch) and semi-global alignment (overlap),
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and three gap modes: linear, affine and convex (piecewise affine). It also
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supports Intel SSE4.1+ and AVX2 vectorization (marginally faster due to high
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latency shifts), SIMDe and dispatching.
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WWW: https://github.com/rvaser/spoa
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