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freebsd-ports/science
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Sunpoet Po-Chuan Hsieh 6e5edf87e4 - Update to 1.8.14 
- Update MASTER_SITES
- Use INSTALL_TARGET=install-strip instead of MAKE_ENV=INSTALL_STRIP_FLAG=${STRIP}
- Bump PORTREVISION for science/hdf5 shlib change

Changes:	http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.14-RELEASE.txt
		http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
2015-01-18 10:39:51 +00:00
..
2d-rewriter
Cleanup plist
2014-11-12 18:48:53 +00:00
afni
Cleanup plist
2014-11-12 18:48:53 +00:00
avogadro
- Convert ports of science/ and security to new USES=python
2014-10-24 16:50:42 +00:00
bddsolve
Cleanup plist
2014-11-12 18:48:53 +00:00
bft
…
bodr
Cleanup plist
2014-11-12 18:48:53 +00:00
brian
- Convert ports of science/ and security to new USES=python
2014-10-24 16:50:42 +00:00
buddy
Cleanup plist
2014-11-12 18:48:53 +00:00
cdcl
Cleanup plist
2014-11-12 18:48:53 +00:00
cdf
Cleanup plist
2014-11-12 18:48:53 +00:00
cdo
- Update to 1.8.14
2015-01-18 10:39:51 +00:00
cgnslib
- Update to 1.8.14
2015-01-18 10:39:51 +00:00
cgribex
…
checkmol
…
chemical-mime-data
Split devel/gettext in devel/gettext-runtime and devel/gettext-tools. The
2014-11-29 18:22:32 +00:00
chemtool
Cleanup plist
2014-11-12 18:48:53 +00:00
chemtool-devel
Cleanup plist
2014-11-12 18:48:53 +00:00
clhep
Cleanup plist
2014-11-12 18:48:53 +00:00
colt
…
crf++
Reset maintainership:
2014-12-02 22:40:56 +00:00
dcl
Cleanup plist
2014-11-12 18:48:53 +00:00
devisor
Cleanup plist
2014-11-12 18:48:53 +00:00
dlpoly-classic
- Update net/openmpi to 1.8.4
2014-12-26 14:24:12 +00:00
ecs
- Update to 1.8.14
2015-01-18 10:39:51 +00:00
epte
…
fastcap
Cleanup plist
2014-11-12 18:48:53 +00:00
fasthenry
Cleanup plist
2014-11-12 18:48:53 +00:00
fisicalab
Cleanup plist
2014-11-12 18:48:53 +00:00
fvcom
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
fvcom-mpi
- Update net/openmpi to 1.8.4
2014-12-26 14:24:12 +00:00
fvm
- Update to 1.8.14
2015-01-18 10:39:51 +00:00
gchemutils
Cleanup plist
2014-11-12 18:48:53 +00:00
getdp
Cleanup plist
2014-11-12 18:48:53 +00:00
ghemical
- Upadate biology/mopac to version 1.15
2014-12-16 22:10:23 +00:00
ghmm
Reset maintainership:
2014-12-02 22:40:56 +00:00
gnudatalanguage
- Update to 1.8.14
2015-01-18 10:39:51 +00:00
gramps
- Convert ports of science/ and security to new USES=python
2014-10-24 16:50:42 +00:00
grib_api
Bump portrevision after png update
2014-12-25 20:54:41 +00:00
gromacs
- Update net/openmpi to 1.8.4
2014-12-26 14:24:12 +00:00
gsmc
- Fix missing library problems when the linker enforces explicit linking
2014-08-26 14:06:08 +00:00
gtamsanalyzer
Cleanup plist
2014-11-12 18:48:53 +00:00
gwyddion
- Update to version 2.38
2014-11-02 17:43:03 +00:00
h5utils
- Update to 1.8.14
2015-01-18 10:39:51 +00:00
harminv
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
hdf
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
hdf5
- Update to 1.8.14
2015-01-18 10:39:51 +00:00
hdf-java
- Update to 1.8.14
2015-01-18 10:39:51 +00:00
hs-bio
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
InsightToolkit
Cleanup plist
2014-11-12 18:48:53 +00:00
isaac-cfd
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
jmol
Cleanup plist
2014-11-12 18:48:53 +00:00
jstrack
Change my non-FreeBSD MAINTAINER mail to bofh@
2014-12-24 00:14:11 +00:00
kalzium
KDE/FreeBSD team presents KDE SC 4.14.2 and KDE Workspace 4.11.13!
2014-10-19 15:57:27 +00:00
kst2
science/kst2:
2014-11-13 14:26:54 +00:00
lamprop
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
libctl
science/libctl: update to 3.2.2
2015-01-04 12:56:56 +00:00
libghemical
- Upadate biology/mopac to version 1.15
2014-12-16 22:10:23 +00:00
libint
science: Fix mpqc, libint and unbreak ghemical, and libghemical atomically
2014-09-25 11:04:02 +00:00
libkml
Cleanup plist
2014-11-12 18:48:53 +00:00
liblinear
Drop maintainership as I no longer use these software nor have time and
2015-01-16 17:28:13 +00:00
liboglappth
Cleanup plist
2014-11-12 18:48:53 +00:00
libquantum
…
libsvm
Drop maintainership as I no longer use these software nor have time and
2015-01-16 17:28:13 +00:00
libsvm-python
Drop maintainership as I no longer use these software nor have time and
2015-01-16 17:28:13 +00:00
linsmith
Cleanup plist
2014-11-12 18:48:53 +00:00
massxpert
Bump portrevision after png update
2014-12-25 20:54:41 +00:00
mbdyn
Cleanup plist
2014-11-12 18:48:53 +00:00
mcstas
science/mcstas: USE_BISON is not used
2015-01-05 18:23:27 +00:00
mcstas-comps
New port: science/mcstas-comps
2015-01-05 09:38:16 +00:00
medit
cleanup plist
2014-12-20 19:35:10 +00:00
meep
- Update to 1.8.14
2015-01-18 10:39:51 +00:00
mei
Cleanup plist
2014-11-12 18:48:53 +00:00
metaf2xml
Reset maintainership:
2014-12-02 22:40:56 +00:00
minc2
- Update to 1.8.14
2015-01-18 10:39:51 +00:00
mol2ps
cleanup plist
2014-12-20 19:35:10 +00:00
mpb
- Update to 1.8.14
2015-01-18 10:39:51 +00:00
mpqc
Cleanup plist
2014-11-12 18:48:53 +00:00
mpqc-mpich
Stage science/mpqc and science/mpqc-mpich
2014-09-08 00:20:03 +00:00
ncs
Uses blaslapack.mk.
2015-01-10 15:33:26 +00:00
netcdf
- Update to 1.8.14
2015-01-18 10:39:51 +00:00
netcdf-cxx
- Use USE_GITHUB
2014-08-15 17:27:48 +00:00
netcdf-fortran
- Update to 4.4.1
2014-09-13 15:19:28 +00:00
nifticlib
…
openbabel
Cleanup plist
2014-11-12 18:48:53 +00:00
openkim
Cleanup plist
2014-11-12 18:48:53 +00:00
p5-Algorithm-SVMLight
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
p5-Chemistry-3DBuilder
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
p5-Chemistry-Bond-Find
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
p5-Chemistry-Canonicalize
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
p5-Chemistry-Elements
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
p5-Chemistry-File-MDLMol
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
p5-Chemistry-File-Mopac
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
p5-Chemistry-File-PDB
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
p5-Chemistry-File-SLN
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
p5-Chemistry-File-SMARTS
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
p5-Chemistry-File-SMILES
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
p5-Chemistry-File-VRML
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
p5-Chemistry-File-XYZ
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
p5-Chemistry-FormulaPattern
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
p5-Chemistry-InternalCoords
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
p5-Chemistry-Isotope
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
p5-Chemistry-MacroMol
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
p5-Chemistry-MidasPattern
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
p5-Chemistry-Mok
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
p5-Chemistry-Mol
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
p5-Chemistry-Pattern
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
p5-Chemistry-Reaction
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
p5-Chemistry-Ring
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
p5-Geo-BUFR
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
p5-Geo-Coordinates-Converter
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
p5-Geo-Coordinates-Converter-iArea
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
p5-Geo-ReadGRIB
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
p5-Geo-WebService-Elevation-USGS
- Update to 0.101
2015-01-04 17:12:32 +00:00
p5-PerlMol
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
p5-Physics-Unit
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
paje
Cleanup plist
2014-11-12 18:48:53 +00:00
paraview
- Update to 1.8.14
2015-01-18 10:39:51 +00:00
pnetcdf
- Update net/openmpi to 1.8.4
2014-12-26 14:24:12 +00:00
psychopy
- Update to 1.81.03
2014-12-27 12:38:53 +00:00
pulseview
…
py-cdo
- Add py-cdo 1.2.3
2014-09-13 15:18:32 +00:00
py-coards
- Convert ports of science/ and security to new USES=python
2014-10-24 16:50:42 +00:00
py-DendroPy
Cleanup plist
2014-11-12 18:48:53 +00:00
py-h5py
- Update to 1.8.14
2015-01-18 10:39:51 +00:00
py-hcluster
- Convert ports of science/ and security to new USES=python
2014-10-24 16:50:42 +00:00
py-mdp
Change my non-FreeBSD MAINTAINER mail to bofh@
2014-12-24 00:14:11 +00:00
py-mlpy
- Convert ports of science/ and security to new USES=python
2014-10-24 16:50:42 +00:00
py-netCDF4
- Update to 1.8.14
2015-01-18 10:39:51 +00:00
py-obspy
Fix compilation after recent numpy patch.
2014-10-23 15:23:27 +00:00
py-paida
- Convert ports of science/ and security to new USES=python
2014-10-24 16:50:42 +00:00
py-pupynere
- Convert ports of science/ and security to new USES=python
2014-10-24 16:50:42 +00:00
py-pyaixi
Canonicalize a few licenses
2014-12-07 00:07:47 +00:00
py-pydap
- Convert ports of science/ and security to new USES=python
2014-10-24 16:50:42 +00:00
py-pydicom
- Convert ports of science/ and security to new USES=python
2014-10-24 16:50:42 +00:00
py-pysal
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
py-scikit-learn
Explicitly link with libblas to avoid errors like
2014-10-30 11:52:48 +00:00
py-scimath
- Convert ports of science/ and security to new USES=python
2014-10-24 16:50:42 +00:00
py-scipy
Fix build after r369447
2014-09-30 08:39:34 +00:00
py-ws2300
- Convert ports of science/ and security to new USES=python
2014-10-24 16:50:42 +00:00
pybrain
- Convert ports of science/ and security to new USES=python
2014-10-24 16:50:42 +00:00
pycdf
- Convert ports of science/ and security to new USES=python
2014-10-24 16:50:42 +00:00
pynn
Cleanup plist
2014-11-12 18:48:53 +00:00
pyteomics
- Convert ports of science/ and security to new USES=python
2014-10-24 16:50:42 +00:00
pyteomics.biolccc
- Convert ports of science/ and security to new USES=python
2014-10-24 16:50:42 +00:00
qcl
- Fix build with clang by using std::vector instead of variable size array of non-POD type
2014-09-04 18:43:58 +00:00
qtresistors
…
R-cran-AMORE
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
R-cran-bayesm
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
R-cran-DCluster
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
R-cran-e1071
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
R-cran-eco
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
R-cran-Epi
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
R-cran-epicalc
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
R-cran-snow
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
R-cran-som
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
rubygem-ai4r
science/rubygem-ai4r: update to 1.13
2014-08-23 21:52:50 +00:00
rubygem-cdo
- Add rubygem-cdo 1.2.3
2014-09-13 15:18:54 +00:00
rubygem-netcdf
…
sigrok-cli
…
sigrok-firmware
…
sigrok-firmware-fx2lafw
cleanup plist
2014-12-20 19:35:10 +00:00
sigrok-firmware-utils
Switch default python3 version from 3.3 to 3.4.
2015-01-10 23:15:27 +00:00
silo
- Update to 1.8.14
2015-01-18 10:39:51 +00:00
simlib
…
simsmith
…
step
KDE/FreeBSD team presents KDE SC 4.14.2 and KDE Workspace 4.11.13!
2014-10-19 15:57:27 +00:00
svmlight
Cleanup plist
2014-11-12 18:48:53 +00:00
szip
- Use INSTALL_TARGET=install-strip instead of STRIP_CMD
2015-01-18 10:36:11 +00:00
udunits
- Use INSTALL_TARGET=install-strip instead of MAKE_ENV=INSTALL_STRIP_FLAG=${STRIP}
2015-01-18 10:35:43 +00:00
v_sim
Upgrade to 3.7.2.
2014-12-22 14:36:52 +00:00
veusz
- Convert ports of science/ and security to new USES=python
2014-10-24 16:50:42 +00:00
vmd
Cleanup plist
2014-11-12 18:48:53 +00:00
voro++
Cleanup plist
2014-11-12 18:48:53 +00:00
xfce4-equake-plugin
- Update to 1.3.6
2014-11-15 10:50:32 +00:00
xmakemol
cleanup plist
2014-12-20 19:35:10 +00:00
Makefile
New port: science/mcstas-comps
2015-01-05 09:38:16 +00:00