Renato Botelho 35642ebc86 Add lagan 1.2, efficient tools for large-scale multiple alignments of ... genomic DNA. PR: ports/93058 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar>		2006-03-16 22:31:26 +00:00
..
ariadne	SHA256ify	2006-01-22 08:34:46 +00:00
artemis	- Fix fetch problems	2005-12-05 16:57:26 +00:00
avida	- Add SHA256	2005-11-24 00:04:00 +00:00
babel	- Add SHA256	2005-11-24 00:04:00 +00:00
belvu	Add belvu 2.29, a viewer for multiple sequence alignments.	2006-03-15 10:24:57 +00:00
biojava	SHA256ify	2006-01-22 08:34:46 +00:00
blast	- Update to 2.0.20060101	2006-01-14 19:36:19 +00:00
blat	Add blat 33, a fast tool for local sequence similarity searches.	2006-03-15 10:26:12 +00:00
chemeq	- Resurrect, update to version 1.5 (literally 1.50 since I wanted to avoid	2006-01-19 19:47:59 +00:00
clustalw	SHA256ify	2006-01-22 08:34:46 +00:00
coalesce	- Add SHA256	2005-11-24 00:04:00 +00:00
crimap	SHA256ify	2006-01-22 08:34:46 +00:00
distribfold	Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtry	2006-01-22 00:17:42 +00:00
dna-qc	SHA256ify (manually done and checked)	2006-01-22 09:54:26 +00:00
dotter	Add dotter 20021204 # last modified date in FTP server, a viewer for	2006-03-15 10:35:24 +00:00
embassy	Add missing USE_ICONV	2006-01-26 04:11:16 +00:00
emboss	Conversion to a single libtool environment.	2006-02-23 10:40:44 +00:00
fasta	- Add SHA256	2005-11-24 00:04:00 +00:00
fasta3	Update to 34.t25.d4.	2006-02-10 09:37:02 +00:00
fastdnaml	- Add SHA256	2005-11-24 00:04:00 +00:00
finchtv	SHA256ify	2006-01-22 08:34:46 +00:00
fluctuate	- Add SHA256	2005-11-24 00:04:00 +00:00
garlic	Update to 1.5	2006-03-15 08:10:49 +00:00
genpak	- Add SHA256	2005-11-24 00:04:00 +00:00
gff2ps	SHA256ify	2006-01-22 08:34:46 +00:00
gperiodic	- Add SHA256	2005-11-24 00:04:00 +00:00
grappa	SHA256ify	2006-01-22 08:34:46 +00:00
hmmer	SHA256ify	2006-01-22 08:34:46 +00:00
jalview	Jalview is a multiple alignment editor written in Java. It is used widely in a	2006-02-13 09:42:13 +00:00
kinemage	SHA256ify	2006-01-22 08:34:46 +00:00
L-Breeder	- Update graphics/libglut to 6.4.1.	2006-01-12 12:54:32 +00:00
lagan	Add lagan 1.2, efficient tools for large-scale multiple alignments of	2006-03-16 22:31:26 +00:00
lamarc
libgenome	Conversion to a single libtool environment.	2006-02-23 10:40:44 +00:00
lsysexp	SHA256ify	2006-01-22 08:34:46 +00:00
mafft	Add mafft 5.734, multiple sequence alignments based on fast Fourier	2006-03-15 10:41:16 +00:00
migrate	- Add SHA256	2005-11-24 00:04:00 +00:00
molden	- Update graphics/libglut to 6.4.1.	2006-01-12 12:54:32 +00:00
mopac	SHA256ify (manually done and checked)	2006-01-22 09:54:26 +00:00
nab	SHA256ify	2006-01-22 08:34:46 +00:00
ncbi-toolkit	Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtry	2006-01-22 01:29:46 +00:00
ortep3	SHA256ify	2006-01-22 08:34:46 +00:00
p5-AcePerl	SHA256ify	2006-01-22 08:34:46 +00:00
p5-Bio-ASN1-EntrezGene	SHA256ify	2006-01-22 08:34:46 +00:00
p5-Bio-Das	SHA256ify	2006-01-22 08:34:46 +00:00
p5-bioperl	SHA256ify	2006-01-22 08:34:46 +00:00
p5-bioperl-devel	Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtry	2006-01-22 01:29:46 +00:00
paml
phylip	Put PORTEPOCH back.	2006-02-09 01:17:59 +00:00
platon	SHA256ify	2006-01-22 08:34:46 +00:00
povchem
primer3	SHA256ify	2006-01-22 08:34:46 +00:00
psi88	SHA256ify	2006-01-22 08:34:46 +00:00
py-biopython
pymol	SHA256ify	2006-01-22 08:34:46 +00:00
rasmol	- Add SHA256	2005-11-24 00:04:00 +00:00
recombine	- Add SHA256	2005-11-24 00:04:00 +00:00
ruby-bio	- Add SHA256	2005-11-24 00:04:00 +00:00
seaview	Update to 2006.01.25.	2006-02-09 10:33:47 +00:00
seqio	SHA256ify	2006-01-22 08:34:46 +00:00
sim4	- Add SHA256	2005-11-24 00:04:00 +00:00
t_coffee	Update to 3.27.	2006-02-10 09:45:28 +00:00
tinker	- Add SHA256	2005-11-24 00:04:00 +00:00
treepuzzle	SHA256ify	2006-01-22 08:34:46 +00:00
treeviewx	Update to 0.5.1	2005-12-06 02:00:55 +00:00
tRNAscan-SE	SHA256ify	2006-01-22 08:34:46 +00:00
wise	SHA256ify	2006-01-22 08:34:46 +00:00
xdrawchem	BROKEN: Configure fails	2006-02-20 01:46:03 +00:00
xmolwt	Bump PORTREVISION on glib12/gtk12 consumer ports to ease the upgrade path.	2006-03-07 08:28:06 +00:00
Makefile	Add lagan 1.2, efficient tools for large-scale multiple alignments of	2006-03-16 22:31:26 +00:00