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mirror of https://git.FreeBSD.org/ports.git synced 2024-12-18 03:46:03 +00:00
freebsd-ports/science
2018-06-22 03:06:51 +00:00
..
2d-rewriter
abinit science/abinit: Update 8.8.2 -> 8.8.3 2018-06-21 05:43:38 +00:00
afni Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
aircraft-datcom Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
ALPSCore devel/boost-*: update to 1.67.0 2018-04-18 13:57:42 +00:00
antioch New port: science/antioch: C++ Chemical Kinetics, Thermodynaimics, and Transport Library 2018-04-18 06:51:47 +00:00
atompaw New port: science/atompaw: Tool for projector augmented wave functions for molecular simulations 2018-06-14 05:52:57 +00:00
avogadro devel/boost-*: update to 1.67.0 2018-04-18 13:57:42 +00:00
bddsolve devel/boost-*: update to 1.67.0 2018-04-18 13:57:42 +00:00
bft
bodr
brian Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
buddy
cdcl
cdf Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
cdo Mark ports broken on powerpc64, categories o-z. 2018-06-18 14:40:31 +00:00
cgnslib - Add missing depend on libX11 2018-03-22 08:33:19 +00:00
cgribex
checkmol - Migrate Mk/bsd.fpc.mk to Mk/Uses/fpc.mk 2018-04-05 04:52:36 +00:00
chemical-mime-data
chemps2 science/chemps2: Update 1.8.6 -> 1.8.7 2018-03-26 09:47:56 +00:00
chemtool science/chemtool: Update 1.6.11 -> 1.6.14 2018-03-24 01:06:20 +00:00
chemtool-devel Return maho@'s ports to the pool after his commit bit expired. 2018-03-11 11:20:43 +00:00
clhep science/clhep: Update version 2.3.1.1=>2.4.0.4 2018-04-24 20:51:38 +00:00
colt Mark as broken on powerpc64. 2018-06-08 02:35:17 +00:00
crf++
dcl Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
devisor
dft_tools New port: science/dft_tools: Interface to DFT codes in TRIQS 2018-06-17 02:42:52 +00:00
dkh Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
dlib-cpp Upgrade science/dlib-cpp and science/py-dlib to 19.13. 2018-05-28 11:34:44 +00:00
dlpoly-classic Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
ecs Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
epte
erd Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
fastcap
fasthenry
fisicalab
fsom fsom: Tiny C library for managing SOM (Self-Organizing Maps) neural networks 2018-04-16 18:15:30 +00:00
fvcom Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
fvcom-mpi Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
fvm - Update WWW 2018-03-31 09:33:26 +00:00
gchemutils Fix the build on HEAD. 2018-05-20 15:23:23 +00:00
gdma Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
getdp - Update to 2.11.3. 2018-05-12 22:23:40 +00:00
ghemical Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
ghmm
gnudatalanguage Upgrade to 0.9.8. 2018-04-07 20:06:19 +00:00
gramps science/gramps: Tidy up the USE_PYTHON settings 2018-02-26 15:06:56 +00:00
grib_api Update to 1.26.1 2018-05-17 18:29:50 +00:00
gromacs science/gromacs: Chase the changed tarball 2018-06-16 21:07:10 +00:00
gsmc
gtamsanalyzer
gwyddion
h5utils science/h5utils: Update to 1.13.1 2018-03-22 04:45:38 +00:00
harminv Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
hdf - Switch to new test framework 2018-04-29 08:33:52 +00:00
hdf5 These two ports build and package without issues now on 10.4-STABLE 2018-01-15 05:40:13 +00:00
hdf5-18 Fix plist whith FORTRAN option. 2018-05-07 19:21:09 +00:00
hypre Mark broken on powerpc64. 2018-06-08 02:39:46 +00:00
iboview devel/boost-*: update to 1.67.0 2018-04-18 13:57:42 +00:00
InsightToolkit Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
isaac-cfd Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
jstrack
kalzium Update KDE Applications to 18.04.2 2018-06-10 10:39:35 +00:00
kalzium-kde4 Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
kst2 Add explicit dependence on Qt components 2018-04-07 18:49:01 +00:00
lamprop science/lamprop: Unbreak by fixing the python interpreter in the shebang 2018-03-13 08:27:23 +00:00
libaec Convert to USE_GITLAB 2018-03-14 18:11:33 +00:00
libcint science/libcint: Update 3.0.12 -> 3.0.13 2018-06-15 08:48:31 +00:00
libctl Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
libefp science/libefp: Update to 1.5.0 2017-12-23 18:19:11 +00:00
libgeodecomp devel/boost-*: update to 1.67.0 2018-04-18 13:57:42 +00:00
libghemical Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
libint Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
libkml Convert PORTEXAMPLES=* to PLIST entries 2018-05-19 11:06:20 +00:00
liblinear
liboglappth Return maho@'s ports to the pool after his commit bit expired. 2018-03-11 11:20:43 +00:00
libquantum
libsvm
libsvm-python
libxc Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
linsmith Make libgnome and libgnomeui not implying esound dependency 2018-03-26 12:38:56 +00:00
massxpert Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
mbdyn math/suitesparse: Update 4.0.2 -> 5.2.0 2018-04-26 06:41:30 +00:00
mcstas
mcstas-comps
mcxtrace
mcxtrace-comps science/mcxtrace-comps: remove comment line 2018-05-07 19:43:04 +00:00
medit
meep science/meep: Add license; Add missing dependencies; Order USExx section 2018-03-18 06:01:25 +00:00
mei - Switch to new test framework 2018-04-26 08:33:48 +00:00
metaf2xml
metaphysicl New port: science/metaphysicl: Metaprogramming, operator-overloaded classes for numerical simulations 2018-04-18 04:59:15 +00:00
minc2
mol2ps - Migrate Mk/bsd.fpc.mk to Mk/Uses/fpc.mk 2018-04-05 04:52:36 +00:00
MOOSE-neural-simulator Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
mpb Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
mpqc Mark these ports as broken on aarch64, and, where appropriate, on armvX. 2018-06-22 01:15:19 +00:00
mpqc-mpich Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
ncs science/ncs: Unbreak 2018-03-13 09:50:42 +00:00
netcdf Fix packaging when DAP option is disabled 2018-04-14 23:59:26 +00:00
netcdf-cxx
netcdf-fortran Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
nifticlib Multiple ports: 2018-01-31 01:07:07 +00:00
openbabel science/openbabel: Take maintainership; Add the GUI option using wxWidgets-3.0 2018-06-12 07:39:34 +00:00
openkim - Switch to new test framework 2018-04-23 08:33:47 +00:00
p5-Algorithm-SVMLight Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-3DBuilder Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Bond-Find Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Canonicalize Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Elements Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-MDLMol Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-Mopac Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-PDB Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-SLN Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-SMARTS Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-SMILES Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-VRML Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-XYZ Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-FormulaPattern Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-InternalCoords Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Isotope Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-MacroMol Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-MidasPattern Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Mok Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Mol Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Pattern Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Reaction Add LICENSE 2018-06-05 18:57:18 +00:00
p5-Chemistry-Ring Update WWW 2018-05-27 20:15:16 +00:00
p5-Geo-BUFR Update WWW 2018-05-27 20:15:16 +00:00
p5-Geo-Coordinates-Converter Update WWW 2018-05-27 20:15:16 +00:00
p5-Geo-Coordinates-Converter-iArea Update WWW 2018-05-27 20:15:16 +00:00
p5-Geo-ReadGRIB Update WWW 2018-05-27 20:15:16 +00:00
p5-Geo-WebService-Elevation-USGS Update WWW 2018-05-27 20:15:16 +00:00
p5-Mcstas-Tools Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
p5-PerlMol Update WWW 2018-05-27 20:15:16 +00:00
p5-Physics-Unit Update WWW 2018-05-27 20:15:16 +00:00
paje
paraview science/paraview: Update 5.2.0 -> 5.5.0 2018-06-09 08:03:54 +00:00
pcmsolver Mark ports broken on powerpc64, categories o-z. 2018-06-18 14:40:31 +00:00
PETSc Mark as broken on various tier-2 archs. 2018-06-08 02:29:18 +00:00
pnetcdf Add OPENMPI3 option 2018-05-20 18:56:03 +00:00
psychopy Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
pulseview devel/boost-*: update to 1.67.0 2018-04-18 13:57:42 +00:00
py-abipy science/py-abipy: Change FLAVOR -> PY_FLAVOR 2018-06-19 01:18:08 +00:00
py-cdo Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-coards Switch all pypi.python.org WWWs to a new PyPi home pypi.org where 2018-04-25 16:42:37 +00:00
py-DendroPy %%PYTHON_PYOEXTENSION%% is harmful in python2 style plists 2018-01-28 22:26:46 +00:00
py-dlib Mark these ports as broken on aarch64, and, where appropriate, on armvX. 2018-06-22 01:15:19 +00:00
py-gsd New port: science/py-gsd: GSD (General Simulation Data) file format for Python 2018-05-13 20:32:41 +00:00
py-h5py Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-hcluster Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-MDAnalysis Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-MDAnalysisTests Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-mdp Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-mlpy Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
py-mmtf-python Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-netCDF4 science/py-netCDF4: Add USE_PYTHON=concurrent 2018-06-19 00:03:37 +00:00
py-obspy Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-OpenFermion Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-openpiv Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-paida Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-pupynere Switch all pypi.python.org WWWs to a new PyPi home pypi.org where 2018-04-25 16:42:37 +00:00
py-pyaixi Switch all pypi.python.org WWWs to a new PyPi home pypi.org where 2018-04-25 16:42:37 +00:00
py-pydicom - Update to 1.1.0 2018-06-22 03:06:51 +00:00
py-pymatgen Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-pymol Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-pyosf Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-PyQuante science/py-PyQuante: Change to USES=2.7 2018-06-19 02:14:17 +00:00
py-pysal Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-pyteomics Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-pyteomics.biolccc Switch all pypi.python.org WWWs to a new PyPi home pypi.org where 2018-04-25 16:42:37 +00:00
py-qspin Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
py-quantities New port: science/py-quantities: Support for physical quantities with units, based on numpy 2018-03-29 20:37:39 +00:00
py-scikit-fuzzy Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-scikit-learn Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-scikit-sparse Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-scimath Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-scipy - Update to 1.1.0 2018-05-24 12:23:27 +00:00
py-scoria Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-SimpleSpectral New port: science/py-SimpleSpectral: Simplified scipy.signal.spectral module with only pyFFTW support 2018-06-18 02:34:02 +00:00
py-spglib science/py-spglib: Fix typo in COMMENT 2018-06-19 02:20:42 +00:00
py-tensorflow Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-veusz Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
py-ws2300 science/py-ws2300: Unbroke the port. 2018-02-26 04:16:14 +00:00
pybrain Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
pycdf Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
pynn Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
qcl
qtresistors Reset vg@'s ports after he resigned. 2018-02-23 21:09:47 +00:00
R-cran-AMORE Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-bayesm Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-cmprsk Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-DCluster Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-e1071 Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-eco Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-Epi - Update to 2.30 2018-05-17 06:30:11 +00:00
R-cran-epicalc Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-etm - Update to 0.6-2.1 2018-06-20 03:34:55 +00:00
R-cran-fastICA Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-kernlab - Update to 0.9-26 2018-05-09 00:53:54 +00:00
R-cran-snow Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-som Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-udunits2 Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
rdkit science/rdkit: Update 2018_03_1 -> 2018_03_2 2018-06-17 19:15:55 +00:00
rubygem-ai4r
rubygem-cdo Update to 1.3.6 2018-04-04 18:53:54 +00:00
rubygem-rgeo Add rubygem-rgeo 1.0.0 2018-04-07 16:32:18 +00:00
rubygem-rgeo-geojson Add rubygem-rgeo-geojson 2.0.0 2018-04-07 16:32:45 +00:00
rubygem-rgeo-proj4 Add rubygem-rgeo-proj4 1.0.0 2018-04-07 16:33:14 +00:00
rubygem-rgeo-shapefile Add rubygem-rgeo-shapefile 1.0.0 2018-04-07 16:33:40 +00:00
rubygem-ruby-dcl
rubygem-ruby-netcdf
sigrok-cli Switch pkg-pist WWW: label to apropriate HTTPS addresses. 2018-01-16 15:13:18 +00:00
sigrok-firmware
sigrok-firmware-fx2lafw science/sigrok-firmware-fx2lafw: Update to version 0.1.6. 2018-01-28 21:50:25 +00:00
sigrok-firmware-utils - Fix LICENSE 2018-02-06 15:17:45 +00:00
silo Fix order of variables 2018-03-17 14:43:34 +00:00
simlib
simsmith
spglib New port: science/spglib: C library for finding and handling crystal symmetries 2018-06-15 17:42:24 +00:00
step Update KDE Applications to 18.04.2 2018-06-10 10:39:35 +00:00
step-kde4 math/libqalculate: Update to 2.2.1 2018-02-26 11:22:36 +00:00
svmlight
szip Auto-accept SZIP license, otherwise hundreds of ports are skipped 2018-06-06 12:13:19 +00:00
tfel Adjust USES to fix builds on gcc-based architectures. 2018-06-18 19:03:03 +00:00
triqs science/triqs: Broken on i386 2018-06-21 05:57:43 +00:00
udunits Update to 2.2.26 2017-12-23 16:49:28 +00:00
v_sim Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
vmd Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
voro++ Multiple ports: 2018-01-31 01:07:07 +00:00
xfce4-equake-plugin
xmakemol
Makefile New port: science/py-SimpleSpectral: Simplified scipy.signal.spectral module with only pyFFTW support 2018-06-18 02:34:02 +00:00