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freebsd-ports/science
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Mathieu Arnold f6d56007b9 Remove all := from BUILD_DEPENDS, here are never needed. 
While there, cleanup, and sort depends.

When build and run dependencies are the same, there are three ways to
avoid duplicating the list while not adding the framework added
BUILD_DEPENDS to the RUN_DEPENDS.  In order of preference, they are:

1) use RUN_DEPENDS to set BUILD_DEPENDS:

BUILD_DEPENDS=	${RUN_DEPENDS}
RUN_DEPENDS=	foo:bar/baz

2) create another variable and use it:

MY_DEPENDS= foo:bar/baz
BUILD_DEPENDS=	${MY_DEPENDS}
RUN_DEPENDS=	${MY_DEPENDS}

3) use BUILD_DEPENDS to set RUN_DEPENDS and force evaluation:

BUILD_DEPENDS=	foo:bar/baz
RUN_DEPENDS:=	${BUILD_DEPENDS}

Sponsored by:	Absolight
2018-07-09 08:40:17 +00:00
..
2d-rewriter
abinit science/abinit: Update 8.8.2 -> 8.8.3 2018-06-21 05:43:38 +00:00
afni Update math/gsl to 2.5 2018-06-23 08:27:13 +00:00
aircraft-datcom
ALPSCore devel/boost-*: update to 1.67.0 2018-04-18 13:57:42 +00:00
antioch Update math/gsl to 2.5 2018-06-23 08:27:13 +00:00
atompaw science/atompaw: Update 4.0.0.14 -> 4.1.0.3 2018-07-09 00:31:17 +00:00
avogadro Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
bddsolve devel/boost-*: update to 1.67.0 2018-04-18 13:57:42 +00:00
bft
bodr
brian Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
buddy
cdcl
cdf
cdo Mark ports broken on powerpc64, categories o-z. 2018-06-18 14:40:31 +00:00
cgnslib
cgribex
checkmol
chemical-mime-data
chemps2
chemtool
chemtool-devel
clhep science/clhep: Update version 2.3.1.1=>2.4.0.4 2018-04-24 20:51:38 +00:00
clipper New port: science/clipper: Libraries for the organisation of crystallographic data 2018-07-08 01:27:10 +00:00
colt Mark as broken on powerpc64. 2018-06-08 02:35:17 +00:00
coot New port: science/coot: Crystallographic Object-Oriented Toolkit 2018-07-08 04:45:25 +00:00
crf++
dcl
devisor
dft_tools New port: science/dft_tools: Interface to DFT codes in TRIQS 2018-06-17 02:42:52 +00:00
dkh
dlib-cpp Upgrade science/dlib-cpp and science/py-dlib to 19.13. 2018-05-28 11:34:44 +00:00
dlpoly-classic
eccodes Clean up Makefile 2018-06-28 21:26:47 +00:00
ecs
epte
erd
fastcap
fasthenry
fisicalab Update math/gsl to 2.5 2018-06-23 08:27:13 +00:00
fsom fsom: Tiny C library for managing SOM (Self-Organizing Maps) neural networks 2018-04-16 18:15:30 +00:00
fvcom
fvcom-mpi
fvm
gchemutils science/gchemutils: mark BROKEN if XUL option is chosen 2018-06-23 10:41:05 +00:00
gdma
getdp Update math/gsl to 2.5 2018-06-23 08:27:13 +00:00
ghemical
ghmm
gnudatalanguage Update math/gsl to 2.5 2018-06-23 08:27:13 +00:00
gramps
grib_api Update to 1.26.1 2018-05-17 18:29:50 +00:00
gromacs science/gromacs: Chase the changed tarball 2018-06-16 21:07:10 +00:00
gsmc
gtamsanalyzer
gwyddion
h5utils
harminv
hdf - Switch to new test framework 2018-04-29 08:33:52 +00:00
hdf5 Fix MASTER_SITES 2018-06-27 20:11:59 +00:00
hdf5-18 Fix plist whith FORTRAN option. 2018-05-07 19:21:09 +00:00
hypre Mark broken on powerpc64. 2018-06-08 02:39:46 +00:00
iboview Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
InsightToolkit
isaac-cfd
jstrack
kalzium Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
kalzium-kde4 Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
kst2 Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
lamprop
libaec
libccp4 New port: science/libccp4: Protein X-ray crystallography toolkit 2018-07-08 00:24:55 +00:00
libcint science/libcint: Update 3.0.12 -> 3.0.13 2018-06-15 08:48:31 +00:00
libctl
libefp
libgeodecomp Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
libghemical
libint
libkml Convert PORTEXAMPLES=* to PLIST entries 2018-05-19 11:06:20 +00:00
liblinear Reset MAINTAINER on ports maintained by amutu@amutu.com 2018-06-22 08:04:38 +00:00
liboglappth
libquantum
libssm science/libssm: Version number correcton 1.4 -> 1.4.0 2018-07-08 15:34:16 +00:00
libsvm Reset MAINTAINER on ports maintained by amutu@amutu.com 2018-06-22 08:04:38 +00:00
libsvm-python
libxc
linsmith
massxpert Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
mbdyn science/mbdyn: Take maintainership. 2018-06-22 08:08:30 +00:00
mcstas
mcstas-comps
mcxtrace
mcxtrace-comps science/mcxtrace-comps: remove comment line 2018-05-07 19:43:04 +00:00
medit
meep Update math/gsl to 2.5 2018-06-23 08:27:13 +00:00
mei - Switch to new test framework 2018-04-26 08:33:48 +00:00
metaf2xml
metaphysicl New port: science/metaphysicl: Metaprogramming, operator-overloaded classes for numerical simulations 2018-04-18 04:59:15 +00:00
minc2
mmdb2 science/mmdb2: Update 2.0.12 -> 2.0.16 2018-07-07 23:40:51 +00:00
mol2ps
MOOSE-neural-simulator Update math/gsl to 2.5 2018-06-23 08:27:13 +00:00
mpb
mpqc Mark these ports as broken on aarch64, and, where appropriate, on armvX. 2018-06-22 01:15:19 +00:00
mpqc-mpich
ncs
netcdf Fix packaging when DAP option is disabled 2018-04-14 23:59:26 +00:00
netcdf-cxx
netcdf-fortran
nifticlib
openbabel science/openbabel: Take maintainership; Add the GUI option using wxWidgets-3.0 2018-06-12 07:39:34 +00:00
openkim - Switch to new test framework 2018-04-23 08:33:47 +00:00
openstructure New port: science/openstructure: Molecular modelling and visualization environment 2018-07-09 04:41:17 +00:00
p5-Algorithm-SVMLight Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-3DBuilder Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Bond-Find Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Canonicalize Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Elements Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-MDLMol Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-Mopac Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-PDB Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-SLN Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-SMARTS Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-SMILES Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-VRML Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-File-XYZ Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-FormulaPattern Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-InternalCoords Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Isotope Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-MacroMol Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-MidasPattern Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Mok Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Mol - Add LICENSE 2018-06-26 09:07:15 +00:00
p5-Chemistry-Pattern Update WWW 2018-05-27 20:15:16 +00:00
p5-Chemistry-Reaction Add LICENSE 2018-06-05 18:57:18 +00:00
p5-Chemistry-Ring Update WWW 2018-05-27 20:15:16 +00:00
p5-Geo-BUFR Update WWW 2018-05-27 20:15:16 +00:00
p5-Geo-Coordinates-Converter Update WWW 2018-05-27 20:15:16 +00:00
p5-Geo-Coordinates-Converter-iArea Update WWW 2018-05-27 20:15:16 +00:00
p5-Geo-ReadGRIB Update WWW 2018-05-27 20:15:16 +00:00
p5-Geo-WebService-Elevation-USGS Update WWW 2018-05-27 20:15:16 +00:00
p5-Mcstas-Tools
p5-PerlMol Update WWW 2018-05-27 20:15:16 +00:00
p5-Physics-Unit Update WWW 2018-05-27 20:15:16 +00:00
paje
paraview Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
pcmsolver Mark ports broken on powerpc64, categories o-z. 2018-06-18 14:40:31 +00:00
PETSc science/PETSc: Update 3.9.2 -> 3.9.3 2018-07-04 20:25:29 +00:00
pnetcdf Add OPENMPI3 option 2018-05-20 18:56:03 +00:00
psychopy Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
pulseview Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
py-abipy science/py-abipy: Change FLAVOR -> PY_FLAVOR 2018-06-19 01:18:08 +00:00
py-cdo Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-coards Switch all pypi.python.org WWWs to a new PyPi home pypi.org where 2018-04-25 16:42:37 +00:00
py-DendroPy
py-dlib Mark these ports as broken on aarch64, and, where appropriate, on armvX. 2018-06-22 01:15:19 +00:00
py-gsd New port: science/py-gsd: GSD (General Simulation Data) file format for Python 2018-05-13 20:32:41 +00:00
py-h5py Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-hcluster Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-kinematics Add py-kinematics 0.0.7 2018-06-24 20:05:42 +00:00
py-MDAnalysis Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-MDAnalysisTests Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-mdp Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-mlpy Update math/gsl to 2.5 2018-06-23 08:27:13 +00:00
py-mmtf-python Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-netCDF4 science/py-netCDF4: Add USE_PYTHON=concurrent 2018-06-19 00:03:37 +00:00
py-obspy Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-OpenFermion science/py-OpenFermion: Update 0.6 -> 0.7 2018-06-26 19:42:18 +00:00
py-openpiv Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-paida Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-pupynere Switch all pypi.python.org WWWs to a new PyPi home pypi.org where 2018-04-25 16:42:37 +00:00
py-pyaixi Switch all pypi.python.org WWWs to a new PyPi home pypi.org where 2018-04-25 16:42:37 +00:00
py-pydicom - Update to 1.1.0 2018-06-22 03:06:51 +00:00
py-pymatgen Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-pymol Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-pyosf Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-PyQuante Mark as broken on aarch64. 2018-06-25 04:54:53 +00:00
py-pysal Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-pyteomics Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-pyteomics.biolccc Switch all pypi.python.org WWWs to a new PyPi home pypi.org where 2018-04-25 16:42:37 +00:00
py-qspin
py-quantities science/py-quantities: Update 0.12.1 -> 0.12.2 2018-07-04 19:21:46 +00:00
py-rmf New port: science/py-rmf: Library to support reading and writing of Rich Molecular Format files 2018-07-01 05:22:27 +00:00
py-ScientificPython science/py-ScientificPython: Change WWW URL; Change to CHEESESHOP 2018-06-30 16:49:08 +00:00
py-scikit-fuzzy Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-scikit-learn Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-scikit-sparse Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-scimath Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-scipy - Update to 1.1.0 2018-05-24 12:23:27 +00:00
py-scoria Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-SimpleSpectral New port: science/py-SimpleSpectral: Simplified scipy.signal.spectral module with only pyFFTW support 2018-06-18 02:34:02 +00:00
py-spglib science/py-spglib: Fix typo in COMMENT 2018-06-19 02:20:42 +00:00
py-tensorflow Correction to r473019: Revert the unintended change to the 'Created by' headers. 2018-06-22 08:28:00 +00:00
py-veusz Remove all := from BUILD_DEPENDS, here are never needed. 2018-07-09 08:40:17 +00:00
py-ws2300
pybrain Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
pycdf
pynn
qcl
qtresistors Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
R-cran-AMORE
R-cran-bayesm
R-cran-cmprsk
R-cran-DCluster
R-cran-e1071
R-cran-eco
R-cran-Epi - Update to 2.30 2018-05-17 06:30:11 +00:00
R-cran-epicalc
R-cran-etm - Update to 0.6-2.1 2018-06-20 03:34:55 +00:00
R-cran-fastICA
R-cran-kernlab - Update to 0.9-26 2018-05-09 00:53:54 +00:00
R-cran-snow
R-cran-som
R-cran-udunits2
rdkit science/rdkit: Update 2018_03_1 -> 2018_03_2 2018-06-17 19:15:55 +00:00
rmf New port: science/rmf: Library to support reading and writing of Rich Molecular Format files 2018-06-29 09:04:22 +00:00
rubygem-ai4r
rubygem-cdo
rubygem-rgeo
rubygem-rgeo-geojson
rubygem-rgeo-proj4
rubygem-rgeo-shapefile
rubygem-ruby-dcl
rubygem-ruby-netcdf
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
simlib science/simlib: Fix build 2018-07-07 21:09:10 +00:00
simsmith
spglib New port: science/spglib: C library for finding and handling crystal symmetries 2018-06-15 17:42:24 +00:00
step Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
step-kde4 Replace bsd.qt.mk by Uses/qt.mk and Uses/qt-dist.mk 2018-06-28 17:39:53 +00:00
svmlight
szip Auto-accept SZIP license, otherwise hundreds of ports are skipped 2018-06-06 12:13:19 +00:00
tfel Adjust USES to fix builds on gcc-based architectures. 2018-06-18 19:03:03 +00:00
triqs science/triqs: Broken on i386 2018-06-21 05:57:43 +00:00
udunits
v_sim
vmd
voro++
xfce4-equake-plugin
xmakemol
Makefile New port: science/openstructure: Molecular modelling and visualization environment 2018-07-09 04:41:17 +00:00