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freebsd-ports/science
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Martin Wilke 22ddf78637 - Update to 2.5.0 
- Switch to options helper
- Switch to do-test

PR:		205137
Submitted by:	maintainer
Approved by:	mat (mentor)
Differential Revision:	D4507
2015-12-11 20:19:10 +00:00
..
2d-rewriter
- Change host to Github
2015-09-11 07:11:23 +00:00
afni
- Update maintainer mail address
2015-12-11 08:48:56 +00:00
avogadro
Add patch to fix the build with CMake 3.2.
2015-06-15 21:49:52 +00:00
bddsolve
science/bddsolve: Set environment, use CXXFLAGS, cleanup
2015-02-25 12:01:52 +00:00
bft
…
bodr
…
brian
…
buddy
Remove Author from pkg-descr and white space fixes
2015-03-02 23:41:59 +00:00
cdcl
…
cdf
Follow-up commit to r396576 since I've forgotten to fix some things:
2015-09-10 16:31:33 +00:00
cdo
- Fix i386 build on FreeBSD 9.x
2015-11-11 16:51:31 +00:00
cgnslib
- Update to 1.8.15
2015-05-24 08:10:28 +00:00
cgribex
- Use INSTALL_TARGET=install-strip instead of STRIP_CMD
2015-01-19 19:51:01 +00:00
checkmol
Fix ports that confused the meaning of WRKDIR and WRKSRC.
2015-11-05 12:36:25 +00:00
chemical-mime-data
- Fix leftover files generated by shared-mime-info
2015-08-14 13:37:02 +00:00
chemtool
…
chemtool-devel
…
clhep
science/clhep: Update version 2.2.0.6=>2.2.0.8
2015-06-17 08:34:24 +00:00
colt
…
crf++
MASTER_SITES cleanup.
2015-05-14 10:15:04 +00:00
dcl
…
devisor
- Switch to options helpers
2015-09-24 21:19:27 +00:00
dlpoly-classic
- Update maintainer mail address
2015-12-11 08:48:56 +00:00
ecs
- Update to 1.8.15
2015-05-24 08:10:28 +00:00
epte
…
fastcap
…
fasthenry
…
fisicalab
Make all GNUstep ports install into the System domain so that the Local domain is available for stuff built from source.
2015-09-19 10:33:34 +00:00
fvcom
- Update maintainer mail address
2015-12-11 08:48:56 +00:00
fvcom-mpi
- Update maintainer mail address
2015-12-11 08:48:56 +00:00
fvm
- Update to 1.8.15
2015-05-24 08:10:28 +00:00
gchemutils
MASTER_SITES cleanup.
2015-05-14 10:15:04 +00:00
getdp
…
ghemical
Part 1 of adding USE_GNOME=intltool to ports that require it.
2015-08-02 20:23:55 +00:00
ghmm
- Update to 0.9.r3
2015-09-18 06:16:31 +00:00
gnudatalanguage
graphics/GraphicsMagick: Upgrade version 1.3.21 => 1.3.22
2015-10-11 16:20:41 +00:00
gramps
Part 1 of adding USE_GNOME=intltool to ports that require it.
2015-08-02 20:23:55 +00:00
grib_api
- Update to 1.13.1
2015-06-15 14:42:53 +00:00
gromacs
- Update to 5.0.6
2015-08-16 21:31:41 +00:00
gsmc
Reassign to hamradio@
2015-08-18 20:37:35 +00:00
gtamsanalyzer
Make all GNUstep ports install into the System domain so that the Local domain is available for stuff built from source.
2015-09-19 10:33:34 +00:00
gwyddion
Update to version 2.42
2015-10-29 20:45:12 +00:00
h5utils
- Update to 1.8.15
2015-05-24 08:10:28 +00:00
harminv
- Switch to guile2
2015-03-10 20:45:19 +00:00
hdf
Reformat port description text and split it into three paragraphs to improve
2015-09-10 17:11:12 +00:00
hdf5
- Convert to new test framework
2015-10-01 15:56:04 +00:00
hdf-java
Deprecate ports broken for more than 6 months
2015-11-29 09:51:30 +00:00
hs-bio
- Update The Glorious Glasgow Haskell Compiler to version 7.10.2
2015-08-20 23:02:14 +00:00
InsightToolkit
science/InsightToolkit: update 4.8.1 -> 4.8.2
2015-11-26 10:45:58 +00:00
isaac-cfd
…
jmol
Mark a few ports BROKEN: unfetchable
2015-11-09 12:59:03 +00:00
jstrack
- Add empty directory to plist, sort plist
2015-09-09 14:53:30 +00:00
kalzium
Update KDE SC to 4.14.3
2015-03-11 23:11:47 +00:00
kst2
Convert my ports to new options helpers
2015-08-25 10:03:08 +00:00
lamprop
…
libctl
science/libctl: update to 3.2.2
2015-01-04 12:56:56 +00:00
libghemical
…
libint
- Update to version 1.1.6
2015-10-24 17:55:23 +00:00
libkml
- Update BUILD_DEPENDS: remove redundant LOCALBASE/bin
2015-11-04 20:17:14 +00:00
liblinear
- Switch to options helpers
2015-09-25 11:50:47 +00:00
liboglappth
Remove trailing whitespace from Makefiles, M-X.
2015-10-08 15:12:22 +00:00
libquantum
…
libsvm
Cleanup DIST* variables.
2015-05-11 18:34:57 +00:00
libsvm-python
Remove Author from pkg-descr and white space fixes
2015-03-02 23:41:59 +00:00
libxc
Add a port of Libxc, a library of exchange-correlation functionals for
2015-10-26 10:10:10 +00:00
linsmith
Update to latest release.
2015-11-27 21:43:28 +00:00
massxpert
Drop USES=iconv.
2015-09-11 09:43:07 +00:00
mbdyn
- Use blaslapack
2015-02-05 22:51:22 +00:00
mcstas
science/mcstats[-comps]: update 2.1 -> 2.2a
2015-11-12 02:29:59 +00:00
mcstas-comps
science/mcstats[-comps]: update 2.1 -> 2.2a
2015-11-12 02:29:59 +00:00
medit
Fix ports that confused the meaning of WRKDIR and WRKSRC.
2015-11-05 12:36:25 +00:00
meep
Fix build. Options helpers cannot be used here.
2015-08-03 17:55:15 +00:00
mei
…
metaf2xml
science/metaf2xml update 1.56 -> 1.57
2015-07-14 21:00:53 +00:00
minc2
- Update to 1.8.15
2015-05-24 08:10:28 +00:00
mol2ps
Mark a few ports BROKEN: unfetchable
2015-11-09 12:59:03 +00:00
mpb
- Update to 1.8.15
2015-05-24 08:10:28 +00:00
mpqc
- Add missing manpage
2015-10-01 07:04:30 +00:00
mpqc-mpich
- Add missing manpage
2015-10-01 07:04:30 +00:00
ncs
Upgrade ncs to 2.0.8 with its dependencies.
2015-05-14 17:31:29 +00:00
netcdf
- Update BUILD_DEPENDS: remove redundant LOCALBASE/bin
2015-11-04 20:14:52 +00:00
netcdf-cxx
- Use USES=localbase
2015-10-19 20:21:01 +00:00
netcdf-fortran
- Use USES=localbase
2015-10-19 20:21:05 +00:00
nifticlib
- Update maintainer mail address
2015-12-11 08:48:56 +00:00
openbabel
Convert my ports to new options helpers
2015-08-25 10:03:08 +00:00
openkim
- Update maintainer mail address
2015-12-11 08:48:56 +00:00
orthanc
Upgrade to upstream version 0.9.4
2015-09-28 13:38:59 +00:00
orthanc-dicomweb
This plugin extends the RESTful API of Orthanc with WADO and DICOMweb
2015-10-06 15:54:48 +00:00
orthanc-postgresql
- Update from 1.2 to 1.3, fix build
2015-10-07 13:02:02 +00:00
orthanc-webviewer
- Update to 1.2
2015-08-17 09:17:56 +00:00
p5-Algorithm-SVMLight
…
p5-Chemistry-3DBuilder
…
p5-Chemistry-Bond-Find
…
p5-Chemistry-Canonicalize
…
p5-Chemistry-Elements
…
p5-Chemistry-File-MDLMol
…
p5-Chemistry-File-Mopac
…
p5-Chemistry-File-PDB
…
p5-Chemistry-File-SLN
…
p5-Chemistry-File-SMARTS
…
p5-Chemistry-File-SMILES
- Fix shebangs
2015-05-28 18:15:01 +00:00
p5-Chemistry-File-VRML
…
p5-Chemistry-File-XYZ
…
p5-Chemistry-FormulaPattern
…
p5-Chemistry-InternalCoords
…
p5-Chemistry-Isotope
…
p5-Chemistry-MacroMol
…
p5-Chemistry-MidasPattern
…
p5-Chemistry-Mok
Make it so that the default Perl is always called perl5.
2015-09-14 12:19:48 +00:00
p5-Chemistry-Mol
…
p5-Chemistry-Pattern
…
p5-Chemistry-Reaction
…
p5-Chemistry-Ring
…
p5-Geo-BUFR
Make it so that the default Perl is always called perl5.
2015-09-14 12:19:48 +00:00
p5-Geo-Coordinates-Converter
MASTER_SITES cleanup.
2015-05-14 10:15:04 +00:00
p5-Geo-Coordinates-Converter-iArea
- Add NO_ARCH
2015-10-03 17:11:36 +00:00
p5-Geo-ReadGRIB
…
p5-Geo-WebService-Elevation-USGS
- Update to 0.103
2015-10-10 00:11:24 +00:00
p5-Mcstas-Tools
Add new port p5-Mcstas-Tools, a general tool for simulating neutron scattering instruments and experiments
2015-11-20 23:34:39 +00:00
p5-PerlMol
…
p5-Physics-Unit
Make it so that the default Perl is always called perl5.
2015-09-14 12:19:48 +00:00
paje
Make all GNUstep ports install into the System domain so that the Local domain is available for stuff built from source.
2015-09-19 10:33:34 +00:00
paraview
Convert to USES=jpeg
2015-06-22 18:33:20 +00:00
pnetcdf
- Update to 1.10.0
2015-09-17 02:58:01 +00:00
psychopy
Mark a few ports BROKEN: unfetchable
2015-11-09 12:59:03 +00:00
pulseview
- Bump PORTREVISION after libzip update
2015-08-28 10:48:41 +00:00
py-cdo
- Update RUN_DEPENDS: remove redundant LOCALBASE/bin
2015-11-04 20:14:57 +00:00
py-coards
…
py-DendroPy
- Don't cat pkg-message from Makefiles
2015-05-27 00:15:04 +00:00
py-h5py
- Update to 2.5.0
2015-12-11 20:19:10 +00:00
py-hcluster
- Add LICENSE
2015-09-14 12:20:09 +00:00
py-mdp
Remove UNIQUENAME and LATEST_LINK.
2015-08-17 14:20:40 +00:00
py-mlpy
Canonicalize some dependencies on numpy
2015-01-23 15:21:52 +00:00
py-netCDF4
- Update to 1.8.15
2015-05-24 08:10:28 +00:00
py-obspy
- Update to 0.10.2
2015-09-13 07:02:47 +00:00
py-paida
…
py-pupynere
…
py-pyaixi
- Update to 1.0.4
2015-12-10 13:59:33 +00:00
py-pydap
- Mark BROKEN: does not build:
2015-08-10 20:00:30 +00:00
py-pydicom
- Fix shebangs
2015-06-05 21:10:18 +00:00
py-pysal
- Update to 1.10.0
2015-10-04 17:59:41 +00:00
py-pyteomics
Rename my ports to comply with Python ports policy
2015-11-02 09:24:50 +00:00
py-pyteomics.biolccc
Rename my ports to comply with Python ports policy
2015-11-02 09:24:50 +00:00
py-scikit-learn
Update to version 0.17.
2015-12-07 12:05:17 +00:00
py-scikit-sparse
- Fix build when using python 3.x
2015-07-26 15:11:39 +00:00
py-scimath
- Unbreak
2015-03-14 15:07:54 +00:00
py-scipy
- Update to 0.16.1
2015-11-09 18:44:23 +00:00
py-ws2300
- Add missing files to plist
2015-06-05 21:10:48 +00:00
pybrain
Update ports in the s* categores to not use GH_COMMIT.
2015-05-07 17:41:23 +00:00
pycdf
- Strip library
2015-06-03 16:51:58 +00:00
pynn
- Update to 0.8.0
2015-12-11 00:44:01 +00:00
qcl
…
qtresistors
…
R-cran-AMORE
…
R-cran-bayesm
…
R-cran-cmprsk
- Add new port: science/R-cran-cmprsk
2015-11-08 05:46:50 +00:00
R-cran-DCluster
- Update to 0.2-7
2015-06-13 05:45:48 +00:00
R-cran-e1071
- Update to 1.6-7
2015-08-08 07:13:44 +00:00
R-cran-eco
…
R-cran-Epi
- Update to 1.1.71
2015-11-08 06:46:59 +00:00
R-cran-epicalc
…
R-cran-etm
- Add new port: science/R-cran-etm
2015-11-08 06:15:14 +00:00
R-cran-snow
- Update to 0.4-1
2015-12-06 11:01:46 +00:00
R-cran-som
…
rubygem-ai4r
Set NO_ARCH for remaining rubygem-* ports with no arch dependent files
2015-07-02 16:01:06 +00:00
rubygem-cdo
- Update to 1.2.7
2015-11-20 22:47:14 +00:00
rubygem-ruby-dcl
science/rubygem-ruby-dcl: Fix category.
2015-03-09 17:36:19 +00:00
rubygem-ruby-netcdf
- Move science/rubygem-netcdf to science/rubygem-ruby-netcdf
2015-05-24 15:35:51 +00:00
sigrok-cli
- Bump PORTREVISION after libzip update
2015-08-28 10:48:41 +00:00
sigrok-firmware
Update ports in the s* categores to not use GH_COMMIT.
2015-05-07 17:41:23 +00:00
sigrok-firmware-fx2lafw
cleanup plist
2014-12-20 19:35:10 +00:00
sigrok-firmware-utils
Switch default python3 version from 3.3 to 3.4.
2015-01-10 23:15:27 +00:00
silo
- Update to 1.8.15
2015-05-24 08:10:28 +00:00
simlib
- Strip library
2015-05-17 14:43:37 +00:00
simsmith
MASTER_SITES cleanup.
2015-05-14 10:15:04 +00:00
step
Update KDE SC to 4.14.3
2015-03-11 23:11:47 +00:00
svmlight
- Add LICENSE
2015-03-07 03:18:42 +00:00
szip
- Convert to new test framework
2015-10-01 15:56:21 +00:00
udunits
- Update to 2.2.20
2015-10-27 15:50:25 +00:00
v_sim
Part 1 of adding USE_GNOME=intltool to ports that require it.
2015-08-02 20:23:55 +00:00
veusz
…
vmd
3 ports categories: Remove $PTHREAD_LIBS
2015-03-24 22:17:41 +00:00
voro++
- Update maintainer mail address
2015-12-11 08:48:56 +00:00
xfce4-equake-plugin
- Update to 1.3.8
2015-08-19 04:38:46 +00:00
xmakemol
cleanup plist
2014-12-20 19:35:10 +00:00
Makefile
Add new port p5-Mcstas-Tools, a general tool for simulating neutron scattering instruments and experiments
2015-11-20 23:34:39 +00:00