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48 lines
1.5 KiB
Makefile
48 lines
1.5 KiB
Makefile
PORTNAME= bwa
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PORTVERSION= 0.7.17
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DISTVERSIONPREFIX=v
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CATEGORIES= biology
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PATCH_SITES= https://github.com/lh3/bwa/commit/
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PATCHFILES= 2a1ae7b6f34a96ea25be007ac9d91e57e9d32284.patch:-p1
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= Burrows-Wheeler sequence aligner
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LICENSE= GPLv3
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# From 0.7.9a: Recheck for 0.7.17.
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BROKEN_aarch64= fails to compile: invalid conversion between vector type and integer type
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BROKEN_armv6= fails to compile: invalid conversion between vector type and integer type
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BROKEN_armv7= fails to compile: invalid conversion between vector type and integer type
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BROKEN_mips= fails to compile: cc1: unrecognized command line option "-msse2"
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BROKEN_mips64= fails to compile: cc1: unrecognized command line option "-msse2"
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BROKEN_powerpc64= fails to compile: ksw.c: emmintrin.h: No such file or directory
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BROKEN_riscv64= fails to compile: invalid conversion between vector type and integer type
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USES= gmake perl5 shebangfix tar:bzip2
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SHEBANG_FILES= qualfa2fq.pl xa2multi.pl
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USE_PERL5= run
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USE_GITHUB= yes
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GH_ACCOUNT= lh3
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PLIST_FILES= bin/bwa bin/qualfa2fq.pl bin/xa2multi.pl man/man1/bwa.1.gz
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.include <bsd.port.options.mk>
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.if ${ARCH} == amd64 || ${ARCH} == i386
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# Avoid #error in emmintrin.h
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CFLAGS+= -msse2
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.elif ${ARCH} == powerpc64le
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CFLAGS+= -DNO_WARN_X86_INTRINSICS
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USES+= compiler:gcc-c++11-lib
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.endif
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do-install:
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${INSTALL_PROGRAM} ${WRKSRC}/bwa ${STAGEDIR}${PREFIX}/bin
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${INSTALL_SCRIPT} ${WRKSRC}/*.pl ${STAGEDIR}${PREFIX}/bin
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${INSTALL_MAN} ${WRKSRC}/*.1 ${STAGEDIR}${MAN1PREFIX}/man/man1
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.include <bsd.port.mk>
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