mirror/freebsd-ports
1
0
Fork 0
mirror of https://git.FreeBSD.org/ports.git synced 2025-02-08 12:01:56 +00:00
Code Issues Releases Activity
freebsd-ports/science
History
Ganael LAPLANCHE 555ae57247 Update devel/tbb to 2020.2 and bump dependent port's revisions 
Changelog: https://github.com/oneapi-src/oneTBB/blob/tbb_2020/CHANGES
2020-04-01 14:14:51 +00:00
..
2d-rewriter
science/2d-rewriter:
2020-03-29 05:55:51 +00:00
abinit
Drop dependency on devel/openmp
2020-03-08 21:56:36 +00:00
afni
math/gsl: update to 2.6
2019-10-25 23:41:34 +00:00
agrum
science/agrum: Update 0.17.1 -> 0.17.2
2020-03-24 03:31:42 +00:00
aircraft-datcom
audio/festvox-cmu_us_slt_arctic, games/flightgear-terragear, graphics/zathura-cb, graphics/zathura-pdf-poppler, graphics/zathura-ps, math/nfft, net/py-mpi4py, science/aircraft-datcom, x11-themes/gnome-icons-luv: reset MAINTAINER
2020-03-02 17:35:42 +00:00
ALPSCore
devel/boost-*: update to 1.72.0
2019-12-11 17:53:48 +00:00
antioch
math/gsl: update to 2.6
2019-10-25 23:41:34 +00:00
apbs
…
atom
Mark a few ports broken (unfetchable)
2020-01-05 10:26:04 +00:00
atompaw
atompaw is actually fetchable
2020-01-05 11:52:46 +00:00
avogadro2
science/avogadro2: Update 1.91.0 -> 1.93.0
2020-02-06 07:09:42 +00:00
avogadrolibs
science/avogadrolibs: Update 1.92.1 -> 1.93.0
2020-02-06 05:09:44 +00:00
bagel
devel/boost-*: update to 1.72.0
2019-12-11 17:53:48 +00:00
bddsolve
devel/boost-*: update to 1.72.0
2019-12-11 17:53:48 +00:00
berkeleygw
Fix math/openblas and bump dependent ports
2020-01-30 14:17:44 +00:00
bodr
…
brian
Deprecate some ports using deprecated version of python
2020-03-08 17:01:46 +00:00
buddy
…
cdcl
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
cdf
…
cdk
New port: science/cdk: Chemistry Development Kit
2020-01-09 16:48:21 +00:00
cdo
Update jasper to 2.0.16
2019-12-27 13:43:00 +00:00
cgnslib
Upgrade to v4.1.1.
2020-03-17 11:01:17 +00:00
cgribex
Update jasper to 2.0.16
2019-12-27 13:43:00 +00:00
checkmol
- Remove compat < 11 dependencies from bootstrap and compiler. It could fix problems
2020-03-06 06:26:05 +00:00
chemical-mime-data
print, science: Add missing USES=gnome
2019-11-08 13:22:59 +00:00
chemps2
Fix math/openblas and bump dependent ports
2020-01-30 14:17:44 +00:00
chemtool
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
chemtool-devel
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
chrono
Drop dependency on devel/openmp
2020-03-08 21:56:36 +00:00
clhep
…
clipper
…
code_saturne
Remove the test about openmp.
2020-03-17 11:01:56 +00:00
colt
Clean up after java/openjdk6 and java/openjdk6-jre removal
2019-11-26 21:46:12 +00:00
coordgenlibs
science/coordgenlibs: Update 1.3.2 -> 1.4.0
2020-03-17 07:32:33 +00:00
cp2k
Mark a few ports BROKEN (unfetchable)
2019-11-06 16:26:34 +00:00
cp2k-data
…
crf++
…
dalton
Fix math/openblas and bump dependent ports
2020-01-30 14:17:44 +00:00
datawarrior
Deprecate java/openjfx8-devel consumers
2020-03-19 09:33:13 +00:00
dcl
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
devisor
Clean up after java/openjdk6 and java/openjdk6-jre removal
2019-11-26 21:46:12 +00:00
dftbplus
Deprecate a few ports
2020-02-23 15:25:53 +00:00
dkh
…
dlib-cpp
science/dlib-cpp and science/py-dlib: Update to 19.19.
2020-02-12 17:28:11 +00:00
dlpoly-classic
Mark a few ports BROKEN (unfetchable)
2019-11-06 16:26:34 +00:00
drawxtl
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
dvc
Deprecate a few ports
2020-02-23 15:25:53 +00:00
eccodes
Update to 2.17.0
2020-03-28 12:46:34 +00:00
elk
…
elmerfem
science/elmerfem: fix build on GCC architectures
2020-03-25 20:36:06 +00:00
epte
…
erd
…
erkale
Drop dependency on devel/openmp
2020-03-08 21:56:36 +00:00
erkale-pseudopotentials
…
esys-particle
Mark science/esys-particle as BROKEN (not just on 13)
2019-12-30 14:15:34 +00:00
fastcap
…
fasthenry
…
fisicalab
Return theraven's ports to the pool after safekeeping his commit bit.
2020-03-05 20:49:05 +00:00
fleur
Fix math/openblas and bump dependent ports
2020-01-30 14:17:44 +00:00
fsom
…
fvcom
…
fvcom-mpi
…
gabedit
Drop dependency on devel/openmp
2020-03-08 21:56:36 +00:00
gamess-us
Fix math/openblas and bump dependent ports
2020-01-30 14:17:44 +00:00
gchemutils
Remove textproc/gnome-doc-utils.
2020-01-27 19:40:17 +00:00
gdma
…
getdp
- Update to 3.3.0.
2019-12-22 02:28:57 +00:00
ghemical
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
ghmm
print, science: Add missing USES=gnome
2019-11-08 13:22:59 +00:00
gnudatalanguage
There is a bug with GraphicsMagick: see
2019-11-23 18:05:22 +00:00
gpaw-setups
…
gramps
Convert the tree to use PY_PILLOW
2020-03-24 19:54:57 +00:00
grib_api
…
gromacs
Clean up ports after FreeBSD 12.0 reached end-of-life.
2020-03-31 16:15:16 +00:00
gsmc
print, science: Add missing USES=gnome
2019-11-08 13:22:59 +00:00
gtamsanalyzer
…
h5utils
…
h5z-zfp
…
harminv
Fix math/openblas and bump dependent ports
2020-01-30 14:17:44 +00:00
hdf
…
hdf5
Revert r529778, ports depending on it were not tested
2020-03-29 20:41:45 +00:00
hdf5-18
…
healpix
…
highfive
science/highfive: Update 2.1.1 -> 2.2
2020-03-26 00:14:17 +00:00
hypre
Fix math/openblas and bump dependent ports
2020-01-30 14:17:44 +00:00
iboview
Fix math/openblas and bump dependent ports
2020-01-30 14:17:44 +00:00
InsightToolkit
- Update devel/gdcm to 3.0.5.
2020-02-22 23:28:41 +00:00
isaac-cfd
…
jdftx
math/gsl: update to 2.6
2019-10-25 23:41:34 +00:00
jmol
science/jmol: Update 14.30.1 -> 14.30.2 and unbreak
2020-02-01 03:32:16 +00:00
jstrack
Update to version 3.4.0, which includes updated documentation, links to
2019-10-02 16:14:46 +00:00
kalzium
KDE Applications: update to 19.12.3
2020-03-06 22:11:55 +00:00
kim-api
…
kst2
math/gsl: update to 2.6
2019-10-25 23:41:34 +00:00
lammps
science/lammps: Update 3Mar2020 -> 19Mar2020
2020-03-20 03:35:55 +00:00
lamprop
…
latte
Drop dependency on devel/openmp
2020-03-08 21:56:36 +00:00
libaec
…
libccp4
…
libcint
Fix math/openblas and bump dependent ports
2020-01-30 14:17:44 +00:00
libctl
…
libefp
…
libgeodecomp
devel/boost-*: update to 1.72.0
2019-12-11 17:53:48 +00:00
libghemical
Pet portlint (trailing whitespace).
2019-11-08 03:23:25 +00:00
libgridxc
…
libint
…
libint2
science/libint2: Update 2.5.0-beta.2-20 -> 2.6.0
2020-01-13 02:54:47 +00:00
libkml
devel/boost-*: update to 1.72.0
2019-12-11 17:53:48 +00:00
liblinear
…
libmsym
…
liboglappth
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
libquantum
…
libssm
…
libsvm
…
libsvm-python
…
libvdwxc
…
libxc
…
liggghts
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
lm
Bump PORTREVISION for devel/protobuf shlib change
2020-01-22 05:53:20 +00:00
luscus
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
madness
Update devel/tbb to 2020.2 and bump dependent port's revisions
2020-04-01 14:14:51 +00:00
maeparser
science/maeparser: Update 1.2.2 -> 1.2.3
2020-03-17 07:19:57 +00:00
massxpert
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
mbdyn
science/mbdyn: use math/metis instead of expired math/metis4 for METIS option
2020-02-22 18:53:40 +00:00
mcstas
…
mcstas-comps
…
mcxtrace
…
mcxtrace-comps
…
mdynamix
…
medit
Unbreak medit.
2019-11-20 20:40:53 +00:00
metaphysicl
science/metaphysicl: 0.5.2 -> 0.6.0
2019-10-13 21:17:17 +00:00
minc2
…
mmdb2
science/mmdb2: Update 2.0.19 -> 2.0.20
2020-01-13 03:30:45 +00:00
mmtf-cpp
…
mol2ps
- Remove compat < 11 dependencies from bootstrap and compiler. It could fix problems
2020-03-06 06:26:05 +00:00
molgif
Bump PORTREVISION after r517743 to force relinking.
2019-11-16 12:52:39 +00:00
molscript
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
molsketch
…
mpb
…
mpqc
Fix math/openblas and bump dependent ports
2020-01-30 14:17:44 +00:00
msms
…
multiwfn
Fix math/openblas and bump dependent ports
2020-01-30 14:17:44 +00:00
namd
…
ncnn
science/ncnn: Update 20200106 -> 20200226
2020-02-29 05:22:00 +00:00
nest
Drop dependency on devel/openmp
2020-03-08 21:56:36 +00:00
netcdf
Update to 4.7.3
2019-12-08 16:52:27 +00:00
netcdf-cxx
…
netcdf-fortran
Update to 4.5.2
2019-09-26 18:13:09 +00:00
nifticlib
…
nwchem
science/nwchem: Update 6.8.1.20190820 -> 7.0.0-beta1
2019-11-23 17:44:06 +00:00
nwchem-data
…
octopus
Mark a few ports BROKEN (unfetchable)
2019-11-06 16:26:34 +00:00
openbabel
…
openkim
…
openkim-models
…
openmx
Drop dependency on devel/openmp
2020-03-08 21:56:36 +00:00
opensim-core
science/opensim-core: Update 4.0-601 -> 4.1
2020-02-04 07:01:58 +00:00
opensph
…
opsin
…
p5-Algorithm-SVMLight
…
p5-Chemistry-3DBuilder
…
p5-Chemistry-Bond-Find
…
p5-Chemistry-Canonicalize
…
p5-Chemistry-Elements
…
p5-Chemistry-File-MDLMol
…
p5-Chemistry-File-Mopac
…
p5-Chemistry-File-PDB
…
p5-Chemistry-File-SLN
…
p5-Chemistry-File-SMARTS
…
p5-Chemistry-File-SMILES
…
p5-Chemistry-File-VRML
…
p5-Chemistry-File-XYZ
…
p5-Chemistry-FormulaPattern
…
p5-Chemistry-InternalCoords
…
p5-Chemistry-Isotope
…
p5-Chemistry-MacroMol
…
p5-Chemistry-MidasPattern
…
p5-Chemistry-Mok
…
p5-Chemistry-Mol
…
p5-Chemistry-Pattern
…
p5-Chemistry-Reaction
…
p5-Chemistry-Ring
…
p5-Geo-BUFR
…
p5-Geo-Coordinates-Converter
…
p5-Geo-Coordinates-Converter-iArea
…
p5-Geo-ReadGRIB
Mark a few ports BROKEN (unfetchable)
2019-11-06 16:26:34 +00:00
p5-Geo-WebService-Elevation-USGS
Update to 0.116
2019-10-28 14:57:46 +00:00
p5-Mcstas-Tools
…
p5-PerlMol
…
p5-Physics-Unit
…
packmol
science/packmol: Pack molecules in defined regions of space
2019-09-22 19:06:43 +00:00
pagmo2
Update devel/tbb to 2020.2 and bump dependent port's revisions
2020-04-01 14:14:51 +00:00
paje
…
paraview
Deprecate some ports using deprecated version of python
2020-03-08 17:01:46 +00:00
pcmsolver
science/pcmsolver: fix build on GCC architectures
2019-10-27 19:19:07 +00:00
PETSc
Fix math/openblas and bump dependent ports
2020-01-30 14:17:44 +00:00
pnetcdf
…
pulseview
devel/boost-*: update to 1.72.0
2019-12-11 17:53:48 +00:00
py-abipy
science/py-abipy: Unbreak
2020-03-31 05:50:30 +00:00
py-asdf
Update to 2.5.2
2020-03-01 06:48:55 +00:00
py-ase
science/py-ase: Update 3.18.1 -> 3.19.0
2019-12-27 06:46:45 +00:00
py-avogadrolibs
science/py-avogadrolib: Update 1.91.0-107 -> 1.93.0
2020-02-06 07:17:20 +00:00
py-cdo
…
py-chainer
science/py-chainer: Update 7.1.0 -> 7.2.0
2020-02-15 03:59:09 +00:00
py-chainer-chemistry
science/py-chainer-chemistry: Update 0.6.0 -> 0.7.0
2019-12-22 03:10:17 +00:00
py-chempy
science/py-chempy: Update 0.7.9 -> 0.7.10
2020-03-07 20:47:22 +00:00
py-coards
…
py-DendroPy
…
py-dlib
science/dlib-cpp and science/py-dlib: Update to 19.19.
2020-02-12 17:28:11 +00:00
py-eccodes-python
Update to 0.9.5
2020-01-17 16:40:13 +00:00
py-geolinks
Add py-geolinks 0.2.0
2020-01-18 18:23:32 +00:00
py-geomet
Add py-geomet 0.2.1
2019-12-29 12:46:17 +00:00
py-geometer
Update to 0.2.2
2020-02-17 19:43:41 +00:00
py-gpaw
Fix math/openblas and bump dependent ports
2020-01-30 14:17:44 +00:00
py-GPy
Drop dependency on devel/openmp
2020-03-08 21:56:36 +00:00
py-GPyOpt
Deprecate a few ports
2020-02-23 15:25:53 +00:00
py-gsd
science/py-gsd: Update 1.9.3 -> 1.10.0
2020-01-03 03:58:46 +00:00
py-h5json
New port: science/py-h5json: Tools and library for representing HDF5 in JSON
2020-01-26 10:07:36 +00:00
py-h5py
…
py-kinematics
…
py-lifelines
…
py-MDAnalysis
…
py-MDAnalysisTests
…
py-mdp
…
py-mlpy
Deprecate a few ports
2020-02-23 15:25:53 +00:00
py-mmtf-python
…
py-molmod
science/py-molmod: Update 1.4.4 -> 1.4.5
2019-10-12 16:44:38 +00:00
py-netCDF4
…
py-obspy
- Update to 1.2.1
2020-03-12 03:58:15 +00:00
py-oddt
science/py-oddt: Update 0.6 -> 0.7
2019-12-27 05:12:21 +00:00
py-OpenFermion
…
py-openpiv
…
py-paida
…
py-paramz
…
py-phono3py
Drop dependency on devel/openmp
2020-03-08 21:56:36 +00:00
py-phonopy
…
py-pupynere
…
py-pyaixi
…
py-pycsw
Add py-pycsw 2.4.2
2020-01-18 18:23:39 +00:00
py-pydicom
…
py-PyFR
Drop dependency on devel/openmp
2020-03-08 21:56:36 +00:00
py-pygeodesy
…
py-pygeometa
Add py-pygeometa 0.5.0
2020-01-18 18:23:44 +00:00
py-pymatgen
science/py-pymatgen: fix build on GCC architectures
2020-01-23 10:44:41 +00:00
py-pymol
Deprecate a few ports
2020-02-23 15:25:53 +00:00
py-pyosf
…
py-PyQuante
Deprecate a few ports
2020-02-23 15:25:53 +00:00
py-pysal
…
py-pyteomics
Update to 4.2
2020-03-01 06:49:00 +00:00
py-qcelemental
science/py-qcelemental: Update 0.11.0 -> 0.12.0
2020-01-12 21:07:37 +00:00
py-qcengine
…
py-qspin
…
py-quantities
science/py-quantities: Update 0.12.3 -> 0.12.4
2020-01-12 07:24:33 +00:00
py-rmf
…
py-rmsd
…
py-ruffus
…
py-scikit-fuzzy
Deprecate a few ports
2020-02-23 15:25:53 +00:00
py-scikit-learn
Drop dependency on devel/openmp
2020-03-08 21:56:36 +00:00
py-scikit-sparse
…
py-scimath
…
py-scipy
Revert r524969 and unbreak bulk -a
2020-02-02 16:40:43 +00:00
py-scoria
science/py-scoria: Update 1.0.4 -> 1.0.5
2020-03-28 04:04:51 +00:00
py-SimpleSpectral
…
py-spglib
…
py-tensorflow
devel/icu: update to 66.1
2020-03-13 09:47:16 +00:00
py-tensorflow-estimator
Mark BROKEN: fails to build
2019-11-20 14:00:42 +00:00
py-veusz
science/py-veusz: Add missing USE_PYQT elements; Remove the kde category
2020-03-24 08:24:14 +00:00
py-ws2300
Deprecate a few ports
2020-02-23 15:25:53 +00:00
pybrain
…
pynn
- Update to 0.9.5
2020-02-22 15:05:40 +00:00
qbox
science/qbox: Update 1.68.1 -> 1.68.2
2020-02-05 03:00:02 +00:00
qcl
…
qiskit-aer
science/qiskit-aer: Broken on i386 due to undefined reference to `__atomic_load'
2020-03-15 17:43:20 +00:00
qmcpack
Drop dependency on devel/openmp
2020-03-08 21:56:36 +00:00
quantum-espresso
science/quantum-espresso: Update 6.4.1 -> 6.5
2019-12-31 19:32:59 +00:00
quantum-espresso-pseudopotentials
…
qwalk
…
R-cran-AMORE
…
R-cran-bayesm
- Update to 3.1.4
2019-11-29 23:26:04 +00:00
R-cran-cmprsk
- Update to 2.2-9
2019-10-11 09:12:52 +00:00
R-cran-DCluster
…
R-cran-e1071
- Update to 1.7-3
2019-11-28 14:43:13 +00:00
R-cran-eco
…
R-cran-Epi
- Update to 2.40
2019-11-28 00:12:45 +00:00
R-cran-epicalc
…
R-cran-etm
- Update to 1.0.5.1
2020-01-30 16:35:33 +00:00
R-cran-FAdist
Adding R-cran-FAdist, a R package with a collection of probability distributions
2020-01-28 18:13:38 +00:00
R-cran-fastICA
Return dbn's ports to the pool after safekeeping his commit bit.
2020-02-03 20:21:08 +00:00
R-cran-kernlab
- Update to 0.9-29
2019-11-14 22:29:41 +00:00
R-cran-snow
…
R-cran-som
…
R-cran-udunits2
…
rdkit
Convert the tree to use PY_PILLOW
2020-03-24 19:54:57 +00:00
rmf
Fix build with hdf5 1.10.6
2020-01-01 16:31:57 +00:00
rubygem-ai4r
…
rubygem-cdo
…
rubygem-rgeo
…
rubygem-rgeo-geojson
Cosmetic change
2019-11-03 17:23:27 +00:00
rubygem-rgeo-proj4
…
rubygem-rgeo-shapefile
…
rubygem-ruby-dcl
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
rubygem-ruby-netcdf
…
scidavis
math/gsl: update to 2.6
2019-10-25 23:41:34 +00:00
siesta
…
sigrok-cli
…
sigrok-firmware
…
sigrok-firmware-fx2lafw
science/sigrok-firmware-fx2lafw: Update to version 0.1.7
2019-11-15 20:39:58 +00:00
sigrok-firmware-utils
…
silo
…
simbody
Fix math/openblas and bump dependent ports
2020-01-30 14:17:44 +00:00
simgrid
devel/boost-*: update to 1.72.0
2019-12-11 17:53:48 +00:00
simint
…
simlib
…
simsmith
Clean up after java/openjdk6 and java/openjdk6-jre removal
2019-11-26 21:46:12 +00:00
smoldyn
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
sparta
science/sparta: Update 8Jan2020 -> 24Jan2020
2020-01-24 17:06:22 +00:00
spglib
…
step
KDE Applications: update to 19.12.3
2020-03-06 22:11:55 +00:00
svmlight
…
szip
…
teem
…
tfel
science/tfel: update to version 3.3
2019-12-21 19:53:14 +00:00
tinker
science/tinker: Update 8.7.1 -> 8.7.2
2019-11-29 07:44:51 +00:00
udunits
…
v_sim
Make fetchable again.
2019-11-19 21:38:47 +00:00
vipster
science/vipster: Limit the version format to prevent portscout reporting odd revisions
2020-01-12 20:12:43 +00:00
vmd
Return dbn's ports to the pool after safekeeping his commit bit.
2020-02-03 20:21:08 +00:00
voro++
…
wannier90
science/wannier90: Update 3.0.0 -> 3.1.0
2020-03-08 02:34:49 +00:00
wwplot
science/wwplot: Update 0.0.7 -> 0.0.8
2020-01-25 17:53:30 +00:00
wxmacmolplt
…
xcrysden
Add USES=xorg USES=gl, ports categories s
2019-11-07 17:17:53 +00:00
xdrawchem
…
xfce4-equake-plugin
science/xfce4-equake-plugin: fix build on GCC architectures
2019-10-02 14:02:33 +00:00
yoda
science/yoda: Update 1.7.7 -> 1.8.0
2020-01-19 09:06:26 +00:00
Makefile
New port: science/qiskit-aer: Simulator for quantum circuits, including noise models
2020-03-12 01:05:55 +00:00