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mirror of https://git.FreeBSD.org/ports.git synced 2024-11-22 00:35:15 +00:00
freebsd-ports/science
2019-03-17 01:35:30 +00:00
..
2d-rewriter
abinit science/abinit: Broken on i386 2019-03-02 23:43:01 +00:00
afni
agrum Remove bogus dependency, agrum links against libomp from llvm port 2019-02-16 13:18:10 +00:00
aircraft-datcom
ALPSCore science/ALPSCore: Mark broken on i386 2019-02-02 17:53:04 +00:00
antioch
atom
atompaw
avogadro2 Fix Qt5 symbol version scripts to put the catch-all clause first. When 2019-01-16 11:13:44 +00:00
avogadrolibs Move: science/mmtf -> science/mmtf-cpp 2019-02-16 08:02:02 +00:00
bagel science/bagel: Update 1.2.1 -> 1.2.2 2019-01-15 18:27:47 +00:00
bddsolve
berkeleygw
bodr
brian
buddy
cdcl
cdf
cdo Update science/netcdf to 4.6.3 2019-03-02 17:45:58 +00:00
cgnslib - Upgrade science/cgnslib to 3.4.0 2019-03-06 19:49:56 +00:00
cgribex Update to 1.9.0 2019-02-05 13:48:25 +00:00
checkmol - Add LLD_UNSAFE 2019-01-15 05:43:59 +00:00
chemical-mime-data Backout r493559 2019-02-22 08:12:39 +00:00
chemps2
chemtool
chemtool-devel Fix build on gcc-based architectures: 2019-03-13 05:09:02 +00:00
chrono
clhep
clipper
code_saturne - Upgrade science/cgnslib to 3.4.0 2019-03-06 19:49:56 +00:00
colt
coordgenlibs science/coordgenlibs: Update 1.2.1 -> 1.2.2 2019-03-16 05:51:15 +00:00
coot science/coot: Remove the unused CONFIGURE_ARGS line 2019-01-17 05:59:38 +00:00
cp2k science/cp2k: Remove contiguous blank lines 2019-01-26 05:23:51 +00:00
crf++
dalton
datawarrior science/datawarrior: Update 4.7.2 -> 5.0.0 2019-01-26 08:01:20 +00:00
dcl
devisor
dftbplus
dkh
dlib-cpp Fix build on gcc-based architectures: 2019-03-13 05:10:05 +00:00
dlpoly-classic
drawxtl
dvc Remove unused USE_PYTHON values. 2019-03-13 13:03:11 +00:00
eccodes Update science/netcdf to 4.6.3 2019-03-02 17:45:58 +00:00
elk
epte
erd
erkale Remove bogus dependency, erkale links against libomp from llvm 2019-02-16 13:19:29 +00:00
erkale-pseudopotentials New port: science/erkale-pseudopotentials: Pseudopotentials for Erkale, the quantum chemistry program 2019-01-17 09:42:53 +00:00
esys-particle
fastcap
fasthenry
fisicalab Move Objective-C ports to the v2 GNUstep ABI. 2019-02-03 15:37:58 +00:00
fleur
fsom
fvcom
fvcom-mpi
gabedit science/gabedit: Update 2.5.0 -> 2.5.1 2019-02-10 18:42:25 +00:00
gamess-us
gchemutils
gdma
getdp
ghemical
ghmm
gnudatalanguage Update science/netcdf to 4.6.3 2019-03-02 17:45:58 +00:00
gpaw-setups
gramps science/gramps: Update to 5.0.1 2019-02-04 14:14:38 +00:00
grib_api Update science/netcdf to 4.6.3 2019-03-02 17:45:58 +00:00
gromacs science/gromacs: Update 2019 -> 2019.1 2019-02-17 02:32:07 +00:00
gsmc
gtamsanalyzer Move Objective-C ports to the v2 GNUstep ABI. 2019-02-03 15:37:58 +00:00
gwyddion Fix build on gcc-based architectures: 2019-03-13 05:13:22 +00:00
h5utils
h5z-zfp
harminv
hdf
hdf5
hdf5-18
healpix science/healpix: fix build with GCC-based architectures 2019-02-10 17:09:19 +00:00
hypre science/hypre: unbreak with libc++ 8 2019-03-04 18:35:02 +00:00
iboview Fix Qt5 symbol version scripts to put the catch-all clause first. When 2019-01-16 11:13:44 +00:00
InsightToolkit - Update devel/gdcm to 2.8.9. 2019-03-10 00:48:01 +00:00
isaac-cfd
jdftx
jmol science/jmol: Add the executable jmoldata for headless operation 2019-02-13 10:21:20 +00:00
jstrack
kalzium Update KDE Applications to 18.12.3 2019-03-07 18:35:32 +00:00
kst2 science/kst2: remove QT4/QT5 options (Qt4 deprecation) 2019-03-16 17:54:45 +00:00
lammps
lamprop
latte
libaec Update to 1.0.4 2019-02-12 21:03:10 +00:00
libccp4
libcint
libctl
libefp
libgeodecomp science/libgeodecomp: remove QT4 option (Qt4 drpecation) 2019-03-16 18:00:13 +00:00
libghemical
libgridxc science/libgridxc: Update 0.8.4 -> 0.8.5 2019-02-17 02:24:01 +00:00
libint
libint2
libkml
liblinear
libmsym
liboglappth
libquantum
libssm
libsvm
libsvm-python
libxc
liggghts Fix Qt5 symbol version scripts to put the catch-all clause first. When 2019-01-16 11:13:44 +00:00
lm science/lm: Do not set VMD_VARS twice 2019-01-17 06:24:51 +00:00
luscus
madness
maeparser science/maeparser: Update 1.0.1 -> 1.1 2019-03-02 07:13:36 +00:00
massxpert science/massxpert: Update 3.4.0 -> 3.6.1 2019-03-09 23:23:33 +00:00
mbdyn
mcstas Cleanup RLN usage 2019-01-14 14:05:39 +00:00
mcstas-comps science/mcstas-comps: Update to 2.5 and unbreak 2019-02-20 22:34:23 +00:00
mcxtrace
mcxtrace-comps
mdynamix
medit
meep
metaf2xml
metaphysicl
minc2 Update science/netcdf to 4.6.3 2019-03-02 17:45:58 +00:00
mmdb2
mmtf-cpp Move: science/mmtf -> science/mmtf-cpp 2019-02-16 08:02:02 +00:00
mol2ps - Add LLD_UNSAFE 2019-01-15 05:44:58 +00:00
molgif
molscript New port: science/molscript: Display 3D molecules in schematic and detailed representations 2019-02-13 07:00:58 +00:00
molsketch Fix Qt5 symbol version scripts to put the catch-all clause first. When 2019-01-16 11:13:44 +00:00
mpb
mpqc Update devel/doxygen to 1.8.15 2019-03-05 21:20:27 +00:00
msms
multiwfn
namd
netcdf Update science/netcdf to 4.6.3 2019-03-02 17:45:58 +00:00
netcdf-cxx Update science/netcdf to 4.6.3 2019-03-02 17:45:58 +00:00
netcdf-fortran Update science/netcdf to 4.6.3 2019-03-02 17:45:58 +00:00
nifticlib
nwchem science/nwchem: 6.8.1.20190222 (d8ac0a182) -> 6.8.1.20190314 (b959e5ee0) 2019-03-17 01:35:30 +00:00
nwchem-data New port: science/nwchem-data: Data for NWChem, the computational chemistry software 2019-01-26 22:00:10 +00:00
octopus science/octopus: patches 2019-01-20 01:22:46 +00:00
openbabel
openkim
openmx
opensim-core
opsin New port: science/opsin: Open Parser for Systematic IUPAC Nomenclature of chemical names 2019-02-14 00:54:56 +00:00
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR Update to 1.37 2019-02-17 19:39:21 +00:00
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS
p5-Mcstas-Tools science/p5-Mcstas-Tools: Merge {do,post}-install 2019-02-27 13:15:02 +00:00
p5-PerlMol science/p5-PerlMol: Do not set BUILD_DEPENDS twice 2019-01-08 16:00:58 +00:00
p5-Physics-Unit
paje Move Objective-C ports to the v2 GNUstep ABI. 2019-02-03 15:37:58 +00:00
paraview science/paraview: update to 5.6.0 2019-02-07 16:58:51 +00:00
pcmsolver science/pcmsolver: Update 1.2.2 -> 1.2.3 2019-02-17 02:36:15 +00:00
PETSc
pnetcdf
psychopy
pulseview Fix Qt5 symbol version scripts to put the catch-all clause first. When 2019-01-16 11:13:44 +00:00
py-abipy py-abipy is not compatible with python2 2019-02-04 21:07:51 +00:00
py-asdf Update to 2.3.2 2019-02-20 20:47:15 +00:00
py-ase
py-avogadrolibs Fix Qt5 symbol version scripts to put the catch-all clause first. When 2019-01-16 11:13:44 +00:00
py-cdo
py-chempy
py-coards
py-DendroPy
py-dlib science/dlib-cpp and science/py-dlib: Update to 19.16. 2019-02-23 16:19:52 +00:00
py-gpaw science/py-gpaw: Update 1.5.0 -> 1.5.1 2019-01-26 05:31:44 +00:00
py-GPy
py-GPyOpt
py-gsd science/py-gsd: Update 1.6.0 -> 1.6.1 2019-03-16 16:03:11 +00:00
py-h5py
py-hcluster
py-kinematics
py-lifelines science/py-lifelines: update to 0.19.5 2019-02-27 22:12:09 +00:00
py-MDAnalysis
py-MDAnalysisTests
py-mdp
py-mlpy
py-mmtf-python
py-molmod
py-netCDF4 Update science/netcdf to 4.6.3 2019-03-02 17:45:58 +00:00
py-obspy - Update to 1.1.1 2019-02-28 07:18:24 +00:00
py-oddt New port: science/py-oddt: Open Drug Discovery Toolkit 2019-02-09 22:51:25 +00:00
py-OpenFermion science/py-OpenFermion: Update 0.8 -> 0.9.0 2019-01-17 06:31:46 +00:00
py-openpiv science/py-openpiv: Update to 0.21.0 2019-01-07 10:36:38 +00:00
py-paida
py-paramz
py-phono3py
py-phonopy
py-pupynere
py-pyaixi
py-pydicom - Update to 1.2.2 2019-02-13 23:49:54 +00:00
py-PyFR
py-pygeodesy
py-pymatgen science/py-pymatgen: python-3 only 2019-02-04 19:53:14 +00:00
py-pymol Unbreak INDEX 2019-02-16 10:32:12 +00:00
py-pyosf
py-PyQuante
py-pysal
py-pyteomics
py-pyteomics.biolccc
py-qspin
py-quantities science/py-quantities: Update 0.12.2 -> 0.12.3 2019-02-23 16:06:52 +00:00
py-rmf This port requires USES=compiler:c++11-lang to build on GCC-based 2019-01-12 23:32:09 +00:00
py-rmsd science/py-rmsd: Fix CATEGORIES 2019-01-18 02:07:03 +00:00
py-ScientificPython Update science/netcdf to 4.6.3 2019-03-02 17:45:58 +00:00
py-scikit-fuzzy
py-scikit-learn
py-scikit-sparse
py-scimath
py-scipy
py-scoria
py-SimpleSpectral
py-spglib science/py-spglib: Update 1.11.1 -> 1.12.0 2019-01-31 04:47:08 +00:00
py-ws2300
pybrain
pycdf Update science/netcdf to 4.6.3 2019-03-02 17:45:58 +00:00
pynn - Update to 0.9.3 2019-01-14 03:26:29 +00:00
qbox science/qbox: fix build on powerpc* 2019-02-28 04:32:33 +00:00
qcl
qmcpack
quantum-espresso science/quantum-espresso: Update 6.3 -> 6.4 2019-03-06 03:17:45 +00:00
quantum-espresso-pseudopotentials
qwalk
R-cran-AMORE
R-cran-bayesm
R-cran-cmprsk
R-cran-DCluster
R-cran-e1071
R-cran-eco
R-cran-Epi
R-cran-epicalc
R-cran-etm
R-cran-fastICA
R-cran-kernlab
R-cran-snow
R-cran-som
R-cran-udunits2
rdkit science/rdkit: Update 2018_09_1 -> 2018_09_2 2019-02-23 07:33:55 +00:00
rmf
rubygem-ai4r
rubygem-cdo Update to 1.5.0 2019-02-16 22:54:45 +00:00
rubygem-rgeo Update to 2.0.1 2019-03-09 12:09:33 +00:00
rubygem-rgeo-geojson
rubygem-rgeo-proj4
rubygem-rgeo-shapefile Update to 2.0.0 2019-02-24 17:56:50 +00:00
rubygem-ruby-dcl Conditionalize the dependence of libunwind to x86-only to allow building 2019-01-24 05:09:48 +00:00
rubygem-ruby-netcdf Update science/netcdf to 4.6.3 2019-03-02 17:45:58 +00:00
scidavis Fix Qt5 symbol version scripts to put the catch-all clause first. When 2019-01-16 11:13:44 +00:00
siesta
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo science/silo: remove QT4 option (Qt4 deprecation) 2019-03-16 14:06:23 +00:00
simbody
simint
simlib
simsmith
sparta science/sparta: Update 29Oct2018 -> 15Feb2019 2019-03-16 16:00:50 +00:00
spglib science/spglib: 1.11.2.1 -> 1.12.2 2019-02-10 01:33:34 +00:00
step Update KDE Applications to 18.12.3 2019-03-07 18:35:32 +00:00
svmlight
szip Update to 2.1.1 2019-02-24 17:56:03 +00:00
teem
tfel
tinker science/tinker: Update 8.5.3 -> 8.6.1 2019-03-16 15:50:33 +00:00
udunits
v_sim Update science/netcdf to 4.6.3 2019-03-02 17:45:58 +00:00
vipster science/vipster: Update 1.14.1a -> 1.15b 2019-02-24 19:42:02 +00:00
vmd Update science/netcdf to 4.6.3 2019-03-02 17:45:58 +00:00
voro++
wannier90
wxmacmolplt science/wxmacmolplt: Unbreak, it was crashing with WX-3.1 2019-03-03 08:06:44 +00:00
xcrysden
xdrawchem Fix Qt5 symbol version scripts to put the catch-all clause first. When 2019-01-16 11:13:44 +00:00
xfce4-equake-plugin Clenup xfce ports: 2019-01-22 14:44:38 +00:00
xmakemol
yoda
Makefile Qt4 deprecation: Remove Qt4 and its consumes. 2019-03-16 21:55:51 +00:00