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freebsd-ports/science
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Brendan Fabeny 73fa6e1345 update R to 2.13.1 [1], and adjust dependent ports (this 
includes workarounds intended to fix the broken sparc64
build, and fixes to the static libR, which is now in a
separate slave port, math/libR)

PR:		158947 [1]
Submitted by:	wen ([1], independently)
2011-07-28 04:19:58 +00:00
..
2d-rewriter
- remove MD5
2011-07-03 13:22:24 +00:00
2dhf
- remove MD5
2011-07-03 13:22:24 +00:00
abinit
- remove MD5
2011-07-03 13:22:24 +00:00
afni
- remove MD5
2011-07-03 13:22:24 +00:00
at
- remove MD5
2011-07-03 13:22:24 +00:00
avogadro
- remove MD5
2011-07-03 13:22:24 +00:00
bblimage
Update to 0.72, follow upstream name change, and clean up
2011-07-01 10:46:10 +00:00
bddsolve
- remove MD5
2011-07-03 13:22:24 +00:00
bft
- remove MD5
2011-07-03 13:22:24 +00:00
bodr
- remove MD5
2011-07-03 13:22:24 +00:00
brian
…
buddy
- remove MD5
2011-07-03 13:22:24 +00:00
cdcl
- remove MD5
2011-07-03 13:22:24 +00:00
cdf
- remove MD5
2011-07-03 13:22:24 +00:00
cdo
- Update to 1.5.1
2011-07-16 06:12:30 +00:00
cgnslib
- Bump PORTREVISION for science/hdf5-18 shlib change
2011-07-15 07:00:46 +00:00
checkmol
- remove MD5
2011-07-03 13:22:24 +00:00
chemical-mime-data
- remove MD5
2011-07-03 13:22:24 +00:00
chemtool
- remove MD5
2011-07-03 13:22:24 +00:00
chemtool-devel
- remove MD5
2011-07-03 13:22:24 +00:00
clhep
- remove MD5
2011-07-03 13:22:24 +00:00
colt
Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon,
2011-07-21 05:03:02 +00:00
crf++
- remove MD5
2011-07-03 13:22:24 +00:00
dcl
- remove MD5
2011-07-03 13:22:24 +00:00
devisor
Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon,
2011-07-21 05:03:02 +00:00
dtiquery
- remove MD5
2011-07-03 13:22:24 +00:00
ecs
- Bump PORTREVISION for science/hdf5-18 shlib change
2011-07-15 07:00:46 +00:00
elmer-eio
- remove MD5
2011-07-03 13:22:24 +00:00
elmer-hutiter
…
elmer-matc
- remove MD5
2011-07-03 13:22:24 +00:00
elmer-meshgen2d
- remove MD5
2011-07-03 13:22:24 +00:00
elmergrid
- remove MD5
2011-07-03 13:22:24 +00:00
elmerpost
- remove MD5
2011-07-03 13:22:24 +00:00
epte
- remove MD5
2011-07-03 13:22:24 +00:00
euler
- remove MD5
2011-07-03 13:22:24 +00:00
fastcap
update to 2.0wr-011109 and adopt
2011-03-31 16:20:14 +00:00
fasthenry
update to 3.0wr-011109 and adopt
2011-03-31 16:03:03 +00:00
felt
- remove MD5
2011-07-03 13:22:24 +00:00
flounder
- remove MD5
2011-07-03 13:22:24 +00:00
fvm
- Bump PORTREVISION for science/hdf5-18 shlib change
2011-07-15 07:00:46 +00:00
g3data
- remove MD5
2011-07-03 13:22:24 +00:00
gamess
- remove MD5
2011-07-03 13:22:24 +00:00
gave
- remove MD5
2011-07-03 13:22:24 +00:00
gchemutils
Chase goffice and gnumeric update.
2011-06-23 18:35:22 +00:00
gdis
- remove MD5
2011-07-03 13:22:24 +00:00
gerris
- remove MD5
2011-07-03 13:22:24 +00:00
getdp
- remove MD5
2011-07-03 13:22:24 +00:00
ghemical
- remove MD5
2011-07-03 13:22:24 +00:00
ghmm
- remove MD5
2011-07-03 13:22:24 +00:00
gnudatalanguage
- Bump PORTREVISION for science/hdf5-18 shlib change
2011-07-15 07:00:46 +00:00
gramps
…
gromacs
Update math/gsl to 1.15, and adjust PORTREVISION
2011-05-09 16:42:27 +00:00
gsmc
- remove MD5
2011-07-03 13:22:24 +00:00
gsystem
- remove MD5
2011-07-03 13:22:24 +00:00
gtamsanalyzer
- drop MD5
2011-04-07 18:26:01 +00:00
gwyddion
- remove MD5
2011-07-03 13:22:24 +00:00
h5utils
…
harminv
- remove MD5
2011-07-03 13:22:24 +00:00
hdf
- remove MD5
2011-07-03 13:22:24 +00:00
hdf5
- remove MD5
2011-07-03 13:22:24 +00:00
hdf5-18
- Update to 1.8.7
2011-07-15 06:58:28 +00:00
hdf-java
- Bump PORTREVISION for science/hdf5-18 shlib change
2011-07-15 07:00:46 +00:00
hs-bio
- Update to 0.5.0.1
2011-07-10 01:03:33 +00:00
ics
- remove MD5
2011-07-03 13:22:24 +00:00
InsightToolkit
- remove MD5
2011-07-03 13:22:24 +00:00
isaac-cfd
- remove MD5
2011-07-03 13:22:24 +00:00
jmol
- remove MD5
2011-07-03 13:22:24 +00:00
jstrack
- remove MD5
2011-07-03 13:22:24 +00:00
kmovisto
- remove MD5
2011-07-03 13:22:24 +00:00
kst
Drop maintainership (I don't use Qt3 ports anymore)
2011-07-07 17:34:13 +00:00
kst2
Update math/gsl to 1.15, and adjust PORTREVISION
2011-05-09 16:42:27 +00:00
lamprop
- Update to 1.3.3
2011-06-23 10:17:37 +00:00
libctl
- remove MD5
2011-07-03 13:22:24 +00:00
libghemical
- remove MD5
2011-07-03 13:22:24 +00:00
libint
- remove MD5
2011-07-03 13:22:24 +00:00
libkml
- remove MD5
2011-07-03 13:22:24 +00:00
liblinear
- Update to 1.8
2011-05-02 12:19:32 +00:00
liboglappth
- remove MD5
2011-07-03 13:22:24 +00:00
libquantum
- remove MD5
2011-07-03 13:22:24 +00:00
libsvm
- Update to 3.1 [1]
2011-04-24 04:30:35 +00:00
libsvm-python
…
linsmith
…
massxpert
- Update to 2.4.3
2011-03-31 06:51:37 +00:00
mayavi
…
mbdyn
…
mcstas
- remove MD5
2011-07-03 13:22:24 +00:00
medit
…
meep
- Add optional dependency net/openmpi
2011-06-21 02:19:07 +00:00
minc
- remove MD5
2011-07-03 13:22:24 +00:00
minc2
- remove MD5
2011-07-03 13:22:24 +00:00
mol2ps
- remove MD5
2011-07-03 13:22:24 +00:00
mpb
- remove MD5
2011-07-03 13:22:24 +00:00
mpqc
…
mpqc-mpich
…
ncs
Bump PORTREVISION after open-mofit update
2011-05-02 12:44:53 +00:00
netcdf
- Use bsd.port.options.mk
2011-04-12 15:17:09 +00:00
netcdf3-ftn
…
netcdf4
- Bump PORTREVISION for science/hdf5-18 shlib change
2011-07-15 07:00:46 +00:00
netcdf-ftn
…
nifticlib
- remove MD5
2011-07-03 13:22:24 +00:00
omnetpp
- remove MD5
2011-07-03 13:22:24 +00:00
openbabel
- remove MD5
2011-07-03 13:22:24 +00:00
ovt
Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon,
2011-07-21 05:03:02 +00:00
p5-Algorithm-SVMLight
- remove MD5
2011-07-03 13:22:24 +00:00
p5-Chemistry-3DBuilder
- Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro.
2011-06-20 09:03:27 +00:00
p5-Chemistry-Bond-Find
- Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro.
2011-06-20 09:03:27 +00:00
p5-Chemistry-Canonicalize
- Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro.
2011-06-20 09:03:27 +00:00
p5-Chemistry-Elements
- Cleaning MD5 in perl@'s ports
2011-05-17 11:14:02 +00:00
p5-Chemistry-File-MDLMol
- Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro.
2011-06-20 09:03:27 +00:00
p5-Chemistry-File-Mopac
- Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro.
2011-06-20 09:03:27 +00:00
p5-Chemistry-File-PDB
- remove MD5
2011-07-03 13:22:24 +00:00
p5-Chemistry-File-SLN
- Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro.
2011-06-20 09:03:27 +00:00
p5-Chemistry-File-SMARTS
- Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro.
2011-06-20 09:03:27 +00:00
p5-Chemistry-File-SMILES
- Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro.
2011-06-20 09:03:27 +00:00
p5-Chemistry-File-VRML
- Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro.
2011-06-20 09:03:27 +00:00
p5-Chemistry-File-XYZ
- Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro.
2011-06-20 09:03:27 +00:00
p5-Chemistry-FormulaPattern
- Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro.
2011-06-20 09:03:27 +00:00
p5-Chemistry-InternalCoords
- Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro.
2011-06-20 09:03:27 +00:00
p5-Chemistry-Isotope
- Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro.
2011-06-20 09:03:27 +00:00
p5-Chemistry-MacroMol
- remove MD5
2011-07-03 13:22:24 +00:00
p5-Chemistry-MidasPattern
- Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro.
2011-06-20 09:03:27 +00:00
p5-Chemistry-Mok
- Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro.
2011-06-20 09:03:27 +00:00
p5-Chemistry-Mol
- remove MD5
2011-07-03 13:22:24 +00:00
p5-Chemistry-Pattern
- Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro.
2011-06-20 09:03:27 +00:00
p5-Chemistry-Reaction
- Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro.
2011-06-20 09:03:27 +00:00
p5-Chemistry-Ring
- Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro.
2011-06-20 09:03:27 +00:00
p5-Geo-BUFR
…
p5-Geo-Coordinates-Converter
- Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro.
2011-06-20 09:03:27 +00:00
p5-Geo-Coordinates-Converter-iArea
- Add p5-Geo-Coordinates-Converter-iArea 0.14
2011-06-12 16:18:59 +00:00
p5-Geo-ReadGRIB
- remove MD5
2011-07-03 13:22:24 +00:00
p5-Geo-WebService-Elevation-USGS
- Update to 0.007
2011-06-12 16:29:21 +00:00
p5-PerlMol
- Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro.
2011-06-20 09:03:27 +00:00
p5-Physics-Unit
- remove MD5
2011-07-03 13:22:24 +00:00
paje
- drop MD5
2011-04-07 18:26:01 +00:00
paraview
CMAKE_BUILD_TYPE is set in bsd.cmake.mk now, remove it from Makefiles
2011-04-10 08:48:14 +00:00
peekabot
…
pnetcdf
…
psi3
- remove MD5
2011-07-03 13:22:24 +00:00
psychopy
- Update to 1.65.00
2011-07-05 00:47:55 +00:00
py-biolccc
…
py-DendroPy
- Update to 3.8.1
2011-06-16 08:07:58 +00:00
py-h5py
- remove MD5
2011-07-03 13:22:24 +00:00
py-hcluster
- remove MD5
2011-07-03 13:22:24 +00:00
py-mdp
…
py-mlpy
Update math/gsl to 1.15, and adjust PORTREVISION
2011-05-09 16:42:27 +00:00
py-netCDF4
- Bump PORTREVISION for science/hdf5-18 shlib change
2011-07-15 07:00:46 +00:00
py-obspy-core
- Update to 0.4.8
2011-06-29 01:10:17 +00:00
py-obspy.gse2
- Update to 0.4.8
2011-06-29 01:17:16 +00:00
py-obspy.imaging
obspy.imaging provides tools for displaying features used in seismology.
2011-06-29 08:18:07 +00:00
py-obspy.mseed
- Update to 0.4.9
2011-06-29 01:14:41 +00:00
py-obspy.signal
- Update to 0.4.9
2011-06-29 01:14:41 +00:00
py-obspy.wav
…
py-obspy.xseed
The obspy.xseed package contains methods in order to read, write and
2011-06-29 08:13:17 +00:00
py-openbabel
- remove MD5
2011-07-03 13:22:24 +00:00
py-paida
- remove MD5
2011-07-03 13:22:24 +00:00
py-pydicom
- remove MD5
2011-07-03 13:22:24 +00:00
py-scimath
…
py-scipy
…
py-ws2300
- New port science/py-ws2300
2011-07-01 20:23:41 +00:00
pybrain
- remove MD5
2011-07-03 13:22:24 +00:00
pycdf
- remove MD5
2011-07-03 13:22:24 +00:00
pynn
- remove MD5
2011-07-03 13:22:24 +00:00
pyvox
Update to 0.72, follow upstream name change, and clean up
2011-07-01 10:46:10 +00:00
qcl
- remove MD5
2011-07-03 13:22:24 +00:00
qtresistors
- remove MD5
2011-07-03 13:22:24 +00:00
R-cran-AMORE
update R to 2.13.1 [1], and adjust dependent ports (this
2011-07-28 04:19:58 +00:00
R-cran-bayesm
update R to 2.13.1 [1], and adjust dependent ports (this
2011-07-28 04:19:58 +00:00
ruby-dcl
- remove MD5
2011-07-03 13:22:24 +00:00
ruby-gphys
- remove MD5
2011-07-03 13:22:24 +00:00
ruby-netcdf
…
rubygem-ai4r
- Cannoicalize the WWW: [again],
2011-06-23 17:51:43 +00:00
silo
- remove MD5
2011-07-03 13:22:24 +00:00
simlib
- remove MD5
2011-07-03 13:22:24 +00:00
svmlight
Fix fetch.
2011-07-08 04:07:55 +00:00
szip
- remove MD5
2011-07-03 13:22:24 +00:00
udunits
- Update to 2.1.23
2011-05-25 14:38:41 +00:00
v_sim
…
veusz
Update to 1.12
2011-07-21 11:11:03 +00:00
vis5d+
- remove MD5
2011-07-03 13:22:24 +00:00
vmd
…
x11iraf
- remove MD5
2011-07-03 13:22:24 +00:00
xmakemol
- remove MD5
2011-07-03 13:22:24 +00:00
xmds
- remove MD5
2011-07-03 13:22:24 +00:00
Makefile
- New port science/py-ws2300
2011-07-01 20:23:41 +00:00