mirror/freebsd-ports
1
0
Fork 0
mirror of https://git.FreeBSD.org/ports.git synced 2025-02-01 10:59:55 +00:00
Code Issues Releases Activity
freebsd-ports/biology
History
Wen Heping 26ae2e86f9 - Update to 1.53
2017-07-23 08:15:07 +00:00
..
ariadne
…
artemis
- Fix shebangs
2017-04-21 16:28:25 +00:00
avida
Mark some ports failing on power64. In cases where the error message
2017-05-13 03:35:51 +00:00
babel
…
bcftools
Update math/gsl to 2.4
2017-07-03 20:38:11 +00:00
bedtools
Mark some ports failing on armv6, for errors classified as "clang".
2017-05-27 15:07:11 +00:00
biococoa
…
biojava
Deprecate ports BROKEN for more than 6 months
2017-07-22 11:01:38 +00:00
blat
- Update WWW
2017-06-10 09:01:19 +00:00
bowtie
- Fix shebangs
2017-04-22 09:25:44 +00:00
bowtie2
…
bwa
Mark some ports failing on armv6, for errors classified as "???".
2017-05-26 20:02:44 +00:00
cd-hit
Bump PORTREVISIONs for ports depending on the canonical version of GCC and
2017-04-01 15:23:30 +00:00
cdbfasta
…
chemeq
…
clustalw
…
consed
…
crux
Mark some ports failing on armv6, for errors classified as "???".
2017-05-26 20:02:44 +00:00
diamond
biology/diamond: Update to version 0.9.9
2017-07-03 19:12:18 +00:00
emboss
…
fasta
…
fasta3
…
fastdnaml
…
fastool
…
fasttree
Bump PORTREVISIONs for ports depending on the canonical version of GCC and
2017-04-01 15:23:30 +00:00
fastx-toolkit
…
fluctuate
…
garlic
…
gff2ps
…
gmap
Mark some ports failing on power64. In cases where the error message
2017-05-13 03:35:51 +00:00
gperiodic
…
grappa
…
hmmer
Begin deorbit burn of ia64. We have not attempted to build packages for
2017-06-25 00:29:09 +00:00
htslib
…
iolib
Mark some ports failing on power64. In cases where the error message
2017-05-13 03:35:51 +00:00
jalview
…
jellyfish
Bump PORTREVISIONs for ports depending on the canonical version of GCC and
2017-04-01 15:23:30 +00:00
lagan
…
lamarc
…
libgtextutils
…
libsbml
- Update to 5.15.0
2017-05-18 02:22:18 +00:00
linux-foldingathome
…
mafft
…
mapm3
…
migrate
…
molden
Chase next distfile update. Upstream contacted whether we would be allowed to host a distfile copy.
2017-07-13 21:56:29 +00:00
mopac
Bump PORTREVISIONs for ports depending on the canonical version of GCC and
2017-04-01 15:23:30 +00:00
mrbayes
Update devel/readline to 7.0 patch 3
2017-06-27 13:46:53 +00:00
mummer
…
muscle
…
ncbi-blast+
Bump PORTREVISIONs for ports depending on the canonical version of GCC and
2017-04-01 15:23:30 +00:00
ncbi-toolkit
…
njplot
…
p5-AcePerl
…
p5-Bio-ASN1-EntrezGene
…
p5-Bio-Coordinate
…
p5-Bio-Das
…
p5-Bio-Das-Lite
…
p5-Bio-GFF3
…
p5-Bio-Glite
…
p5-Bio-Graphics
Remove outdated PERL_LEVEL check
2017-06-01 23:50:28 +00:00
p5-Bio-MAGETAB
…
p5-Bio-NEXUS
…
p5-Bio-Phylo
…
p5-Bio-SCF
…
p5-BioPerl
Remove outdated PERL_LEVEL check
2017-06-01 23:50:33 +00:00
p5-BioPerl-Run
…
p5-transdecoder
…
paml
…
phrap
…
phred
…
phylip
…
phyml
Update WWW
2017-05-30 15:22:06 +00:00
plink
Bump PORTREVISIONs for ports depending on the canonical version of GCC and
2017-04-01 15:23:30 +00:00
plinkseq
Mark some ports failing on power64. In cases where the error message
2017-05-13 03:35:51 +00:00
primer3
…
protomol
Revision bump of all ports with USE_GL after consolidation of mesa-libs
2017-05-23 05:03:14 +00:00
psi88
Bump PORTREVISIONs for ports depending on the canonical version of GCC and
2017-04-01 15:23:30 +00:00
py-biom-format
biology/py-biom-format: Update to version 2.1.6
2017-04-29 13:59:15 +00:00
py-biopython
- Update to 1.69
2017-05-03 12:39:28 +00:00
py-bx-python
bx-python is a python library and associated set of scripts to allow for rapid
2017-05-06 06:07:03 +00:00
py-pysam
- Update to 0.11.2.2
2017-06-10 02:03:39 +00:00
pycogent
…
pyfasta
…
python-nexus
- Update to 1.53
2017-07-23 08:15:07 +00:00
recombine
…
ruby-bio
- Update to 1.5.1
2017-05-07 15:44:34 +00:00
rubygem-bio
…
samtools
…
seaview
biology/seaview: Update version 4.6.1=>4.6.2
2017-07-21 17:33:10 +00:00
seqan
…
seqan1
…
seqan-apps
It is possible that r441426 will fix the build problem on armv6. Give
2017-05-21 23:37:34 +00:00
seqio
…
seqtools
Mark some ports failing on power64. In cases where the error message
2017-05-21 21:55:08 +00:00
sim4
…
slclust
…
ssaha
Bump PORTREVISIONs for ports depending on the canonical version of GCC and
2017-04-01 15:23:30 +00:00
t_coffee
Bump PORTREVISIONs for ports depending on the canonical version of GCC and
2017-04-01 15:23:30 +00:00
tinker
Bump PORTREVISIONs for ports depending on the canonical version of GCC and
2017-04-01 15:23:30 +00:00
treepuzzle
…
trimmomatic
…
tRNAscan-SE
…
ugene
Revision bump of all ports with USE_GL after consolidation of mesa-libs
2017-05-23 05:03:14 +00:00
vcftools
…
velvet
…
wise
…
xmolwt
…
Makefile
bx-python is a python library and associated set of scripts to allow for rapid
2017-05-06 06:07:03 +00:00