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freebsd-ports/biology/unanimity/Makefile
2019-12-11 17:53:48 +00:00

47 lines
1.4 KiB
Makefile

# $FreeBSD$
PORTNAME= unanimity
DISTVERSIONPREFIX= v
DISTVERSION= 3.4.1
PORTREVISION= 4
CATEGORIES= biology
# As of March 2018, unanimity is no longer open source.
# See https://github.com/PacificBiosciences/ccs.
MAINTAINER= ports@FreeBSD.org
COMMENT= Pacific Biosciences consensus library and applications
LICENSE= BSD3CLAUSE
LICENSE_FILE= ${WRKSRC}/LICENSE
BROKEN_aarch64= fails to compile: mmintrin.h:47:5: use of undeclared identifier '__builtin_ia32_emms'; did you mean '__builtin_isless'?
# Very sensitive to pbbam and pbcopper versions!
# Fully test new combinations and upgrade them together.
BUILD_DEPENDS= seqan>=2.4.0:biology/seqan \
swig30>=3.0:devel/swig30 \
${PYNUMPY}
LIB_DEPENDS= libhts.so:biology/htslib \
libboost_regex.so:devel/boost-libs \
libpbbam.so.0.18.0:biology/pbbam \
libpbcopper.so.0.4.1:biology/pbcopper
RUN_DEPENDS= ${PYNUMPY}
# Meson needs BOOST_ROOT=${LOCALBASE}
# https://github.com/mesonbuild/meson/issues/2239
USES= compiler:c++14-lang localbase meson pkgconfig python:2.7
USE_LDCONFIG= yes
USE_GITHUB= yes
GH_ACCOUNT= PacificBiosciences
CFLAGS_i386= -msse2 -Wno-c++11-narrowing
LDFLAGS+= -lexecinfo
post-install:
${RLN} ${STAGEDIR}${PREFIX}/lib/libunanimity.so.3.0.0 \
${STAGEDIR}${PREFIX}/lib/libunanimity.so.3.0
${RLN} ${STAGEDIR}${PREFIX}/lib/libunanimity.so.3.0.0 \
${STAGEDIR}${PREFIX}/lib/libunanimity.so.3
.include <bsd.port.mk>