| .. |
|
ariadne
|
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
|
2014-07-29 19:11:51 +00:00 |
|
artemis
|
|
|
|
avida
|
|
|
|
babel
|
Rename biology/ patch-xy patches to reflect the files they modify.
|
2014-07-28 14:22:16 +00:00 |
|
biococoa
|
|
|
|
biojava
|
|
|
|
blast
|
Mark as broken: no distinfo provided
|
2014-06-22 22:06:01 +00:00 |
|
blat
|
Put HOME in MAKE_ARGS to handle pverride of HOME in MAKE_ENV from bsd.port.mk
|
2014-06-25 08:55:55 +00:00 |
|
boinc-simap
|
|
|
|
chemeq
|
|
|
|
clustalw
|
|
|
|
consed
|
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
|
2014-07-29 19:11:51 +00:00 |
|
crux
|
Convert a bunch of USE_BZIP2 to USES=tar:bzip2
|
2014-07-29 18:41:15 +00:00 |
|
embassy
|
Reset maintainership for ports not staged with no pending PR
|
2014-07-23 16:44:27 +00:00 |
|
emboss
|
|
|
|
fasta
|
|
|
|
fasta3
|
|
|
|
fastdnaml
|
|
|
|
fluctuate
|
|
|
|
garlic
|
biology/garlic: Stage properly to unbreak
|
2014-07-17 10:13:06 +00:00 |
|
gff2ps
|
|
|
|
gmap
|
|
|
|
gperiodic
|
|
|
|
grappa
|
|
|
|
hmmer
|
Add DOCS to OPTIONS_DEFINE to ports that check for PORT_OPTIONS:MDOCS.
|
2014-07-15 14:54:54 +00:00 |
|
iolib
|
|
|
|
jalview
|
|
|
|
lagan
|
|
|
|
lamarc
|
|
|
|
libsbml
|
- Update to 5.10.2
|
2014-08-10 06:21:53 +00:00 |
|
linux-foldingathome
|
Stagify.
|
2014-07-06 16:05:34 +00:00 |
|
mafft
|
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
|
2014-07-29 19:11:51 +00:00 |
|
mapm3
|
|
|
|
migrate
|
|
|
|
molden
|
|
|
|
mopac
|
- Switch to USES=libtool, drop .la files
|
2014-08-06 16:05:49 +00:00 |
|
mrbayes
|
|
|
|
mummer
|
biology/mummer: Use OPSYS with OSVERSION
|
2014-07-19 22:00:16 +00:00 |
|
muscle
|
Update to 3.8.31.
|
2014-06-17 21:36:06 +00:00 |
|
ncbi-toolkit
|
|
|
|
njplot
|
|
|
|
ortep3
|
|
|
|
p5-AcePerl
|
Rename biology/ patch-xy patches to reflect the files they modify.
|
2014-07-28 14:22:16 +00:00 |
|
p5-Bio-ASN1-EntrezGene
|
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
|
2014-07-29 19:11:51 +00:00 |
|
p5-Bio-Das
|
|
|
|
p5-Bio-Das-Lite
|
|
|
|
p5-Bio-GFF3
|
|
|
|
p5-Bio-Glite
|
|
|
|
p5-Bio-Graphics
|
Really fix.
|
2014-07-25 23:08:58 +00:00 |
|
p5-Bio-MAGETAB
|
|
|
|
p5-Bio-NEXUS
|
|
|
|
p5-Bio-Phylo
|
|
|
|
p5-Bio-SCF
|
Remove all the bootstrap files (.bs) from the plists.
|
2014-06-10 12:14:12 +00:00 |
|
p5-bioperl
|
biology/p5-bioperl: fix pkg-descr sidenote link
|
2014-08-04 04:32:38 +00:00 |
|
p5-bioperl-run
|
biology/p5-bioperl-run: 1.6.1 -> 1.6.901, unbreak, stagify
|
2014-08-04 08:54:10 +00:00 |
|
paml
|
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
|
2014-07-29 19:11:51 +00:00 |
|
phd2fasta
|
Reset maintainership for ports not staged with no pending PR
|
2014-07-23 16:44:27 +00:00 |
|
phrap
|
|
|
|
phred
|
|
|
|
phylip
|
|
|
|
phyml
|
|
|
|
platon
|
Add a DOCS option.
|
2014-08-03 21:44:23 +00:00 |
|
plink
|
|
|
|
plinkseq
|
- Switch to USES=libtool, drop .la files
|
2014-07-22 22:12:15 +00:00 |
|
povchem
|
Rename biology/ patch-xy patches to reflect the files they modify.
|
2014-07-28 14:22:16 +00:00 |
|
primer3
|
|
|
|
protomol
|
Reset maintainership for ports not staged with no pending PR
|
2014-07-23 16:44:27 +00:00 |
|
psi88
|
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
|
2014-07-29 19:11:51 +00:00 |
|
py-biopython
|
|
|
|
pycogent
|
|
|
|
pyfasta
|
|
|
|
pymol
|
Convert a bunch of USE_BZIP2 to USES=tar:bzip2
|
2014-07-29 18:41:15 +00:00 |
|
python-nexus
|
|
|
|
recombine
|
|
|
|
ruby-bio
|
|
|
|
seaview
|
|
|
|
seqan
|
Use gcc on all platforms.
|
2014-07-10 22:29:52 +00:00 |
|
seqio
|
|
|
|
seqtools
|
USES=execinfo
|
2014-08-04 23:06:21 +00:00 |
|
sim4
|
|
|
|
ssaha
|
|
|
|
t_coffee
|
|
|
|
tinker
|
|
|
|
treepuzzle
|
|
|
|
treeviewx
|
|
|
|
tRNAscan-SE
|
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
|
2014-07-29 19:11:51 +00:00 |
|
ugene
|
USES=execinfo
|
2014-08-04 23:06:21 +00:00 |
|
velvet
|
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
|
2014-07-29 19:11:51 +00:00 |
|
wise
|
|
|
|
xmolwt
|
|
|
|
Makefile
|
|
|
