mirror of
https://git.FreeBSD.org/ports.git
synced 2024-11-25 00:51:21 +00:00
702ce22305
sequences. It stands for Sequence Search and Alignment by Hashing Algorithm. It achieves its fast search speed by converting sequence information into a `hash table' data structure, which can then be searched very rapidly for matches. WWW: http://www.sanger.ac.uk/Software/analysis/SSAHA/ PR: ports/124525 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> Approved by: gabor (mentor, implicit)
21 lines
725 B
C++
21 lines
725 B
C++
--- ./QueryManager/testQueryManager.cpp.orig 2004-03-01 13:51:29.000000000 -0300
|
|
+++ ./QueryManager/testQueryManager.cpp 2008-06-12 15:39:31.000000000 -0300
|
|
@@ -53,7 +53,7 @@
|
|
void reverseString( string& seq )
|
|
{
|
|
string rc;
|
|
- for ( int i(0) ; i < seq.size() ; i++ )
|
|
+ for ( unsigned int i(0) ; i < seq.size() ; i++ )
|
|
{
|
|
if ( ( seq[i] == 'A' ) || (seq[i] == 'a') ) rc = 'T' + rc;
|
|
else if ( ( seq[i] == 'T' ) || (seq[i] == 't') ) rc = 'A' + rc;
|
|
@@ -165,7 +165,7 @@
|
|
int numSeqs = 3;
|
|
int seqSize = 1000;
|
|
int wordLength = 7;
|
|
- int maxHits = 50;
|
|
+// int maxHits = 50;
|
|
|
|
// Generate a random sequence of (numSeqs*seqSize) base pairs ...
|
|
// 1128 is the seed value for the random number generator
|