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84 lines
3.2 KiB
Makefile
84 lines
3.2 KiB
Makefile
# New ports collection makefile for: p5-bioperl
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# Date created: 28 July 2000
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# Whom: Johann Visagie <johann@egenetics.com>
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#
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# $FreeBSD$
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#
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PORTNAME= bioperl
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PORTVERSION= 0.6.2
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CATEGORIES= biology perl5
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MASTER_SITES= ftp://bio.perl.org/pub/DIST/ \
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http://bio.perl.org/Core/Latest/ \
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${MASTER_SITE_PERL_CPAN}
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MASTER_SITE_SUBDIR=Bio
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PKGNAMEPREFIX= p5-
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DISTFILES= ${DISTNAME}${EXTRACT_SUFX} bioperl-ext-0.6.tar.gz
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MAINTAINER= johann@egenetics.com
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BUILD_DEPENDS= ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/HTTP/Request/Common.pm:${PORTSDIR}/www/p5-libwww \
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${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/LWP/UserAgent.pm:${PORTSDIR}/www/p5-libwww \
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${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/${PERL_ARCH}/Ace.pm:${PORTSDIR}/biology/p5-AcePerl \
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${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/IO/Scalar.pm:${PORTSDIR}/devel/p5-IO-stringy
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PERL_CONFIGURE= YES
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MAN3= Bio::Annotation.3 Bio::Annotation::Comment.3 \
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Bio::Annotation::DBLink.3 Bio::Annotation::Reference.3 \
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Bio::DB::Ace.3 Bio::DB::GenBank.3 Bio::DB::GenPept.3 \
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Bio::DB::RandomAccessI.3 Bio::DB::SeqI.3 \
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Bio::Index::Abstract.3 Bio::Index::AbstractSeq.3 \
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Bio::Index::EMBL.3 Bio::Index::Fasta.3 \
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Bio::Index::SwissPfam.3 Bio::LocatableSeq.3 \
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Bio::PrimarySeq.3 Bio::PrimarySeqI.3 Bio::Range.3 \
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Bio::RangeI.3 Bio::Root::Err.3 Bio::Root::Global.3 \
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Bio::Root::IOManager.3 Bio::Root::Object.3 \
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Bio::Root::RootI.3 Bio::Root::Utilities.3 \
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Bio::Root::Vector.3 Bio::Root::Xref.3 \
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Bio::Search::Hit::Fasta.3 Bio::Search::Hit::HitI.3 \
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Bio::Search::Processor.3 Bio::Search::Processor::Fasta.3 \
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Bio::Search::Processor::ProcessorI.3 \
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Bio::Search::Result::Fasta.3 \
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Bio::Search::Result::ResultI.3 Bio::SearchDist.3 \
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Bio::Seq.3 Bio::SeqFeature::FeaturePair.3 \
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Bio::SeqFeature::Generic.3 Bio::SeqFeatureI.3 Bio::SeqI.3 \
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Bio::SeqIO.3 Bio::SeqIO::FTHelper.3 \
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Bio::SeqIO::MultiFile.3 Bio::SeqIO::embl.3 \
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Bio::SeqIO::fasta.3 Bio::SeqIO::gcg.3 \
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Bio::SeqIO::genbank.3 Bio::SeqIO::pir.3 Bio::SeqIO::raw.3 \
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Bio::SeqIO::scf.3 Bio::SeqIO::swiss.3 Bio::SimpleAlign.3 \
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Bio::Species.3 Bio::Tools::AlignFactory.3 \
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Bio::Tools::Blast.3 Bio::Tools::Blast::HSP.3 \
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Bio::Tools::Blast::HTML.3 \
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Bio::Tools::Blast::Run::LocalBlast.3 \
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Bio::Tools::Blast::Run::Webblast.3 \
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Bio::Tools::Blast::Sbjct.3 Bio::Tools::CodonTable.3 \
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Bio::Tools::Fasta.3 Bio::Tools::HMMER::Domain.3 \
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Bio::Tools::HMMER::Results.3 Bio::Tools::HMMER::Set.3 \
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Bio::Tools::IUPAC.3 Bio::Tools::RestrictionEnzyme.3 \
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Bio::Tools::SeqAnal.3 Bio::Tools::SeqPattern.3 \
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Bio::Tools::SeqStats.3 Bio::Tools::SeqWords.3 \
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Bio::Tools::Sigcleave.3 Bio::Tools::WWW.3 \
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Bio::Tools::pSW.3 Bio::UnivAln.3 \
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bioback.3 biodesign.3 bioperl.3 biostart.3
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MANPREFIX= ${PREFIX}/lib/perl5/${PERL_VERSION}
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EXT_WRKSRC= ${WRKDIR}/bioperl-ext-06/Bio/Ext/Align
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post-configure:
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@ (cd ${EXT_WRKSRC} && \
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${SETENV} ${CONFIGURE_ENV} \
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${PERL5} ${CONFIGURE_SCRIPT} ${CONFIGURE_ARGS})
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post-build:
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@ (cd ${EXT_WRKSRC} && \
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${MAKE} ${MAKE_FLAGS} ${MAKEFILE} ${MAKE_ARGS} ${ALL_TARGET})
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post-install:
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@ (cd ${EXT_WRKSRC} && \
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${SETENV} ${MAKE_ENV} ${MAKE} ${MAKE_FLAGS} \
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${MAKEFILE} ${MAKE_ARGS} ${INSTALL_TARGET})
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.include <bsd.port.mk>
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