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freebsd-ports/science
History
Raphael Kubo da Costa cfd72f5d51 Fix the build on 64-bits systems. 
Add "-fPIC" to the compilation lines if `uname -p' returns "amd64"
(FreeBSD's case).

The patch has been submitted upstream.

PR:		ports/178537
2013-05-14 20:10:28 +00:00
..
2d-rewriter
2dhf adjust linking and comments in dependent ports after the math/atlas update; 2011-11-22 11:14:10 +00:00
abinit Rectify USE_TEX to support both of teTeX and TeXLive. 2013-05-11 17:58:55 +00:00
afni - Convert USE_ICONV=yes to USES=iconv 2013-04-27 18:25:24 +00:00
avogadro Fix the build on 64-bits systems. 2013-05-14 20:10:28 +00:00
bddsolve Mark as broken on powerpc. 2011-12-28 06:55:26 +00:00
bft Upgrade Code_Saturne to 2.0. 2012-07-07 15:15:56 +00:00
bodr
brian - Update to 1.4.0 2012-09-04 07:13:08 +00:00
buddy Remove more tags from pkg-descr files fo the form: 2011-10-24 04:17:37 +00:00
cdcl Update to 5.4.7 2012-12-19 03:01:41 +00:00
cdf Mark broken on powerpc as well as sparc64. (In fact, on all the tier-2s.) 2011-11-10 05:38:32 +00:00
cdo This changes almost all the "gnomehack" only USE_GNOME cases to USES= pathfix. 2013-03-19 13:04:30 +00:00
cgnslib - convert USE_CMAKE to USES 2013-03-22 20:06:14 +00:00
checkmol - update to 0.4e 2013-04-07 07:11:16 +00:00
chemical-mime-data - update png to 1.5.10 2012-06-01 05:26:28 +00:00
chemtool - update png to 1.5.10 2012-06-01 05:26:28 +00:00
chemtool-devel - Convert USE_GETTEXT to USES (part 3) 2013-04-24 18:10:30 +00:00
clhep Remove USE_GNOME=gnometarget from ports. It has been a empty keyword since 2011-08-11 19:20:17 +00:00
colt Decommissioning java 1.5 (EOLed since October 2009): 2012-12-10 13:43:43 +00:00
crf++
dcl - Update to 5.4.7 2012-12-13 02:25:38 +00:00
devisor Style: tab -> space. 2013-03-28 16:28:59 +00:00
dlpoly-classic Convert science to new options framework 2013-04-28 22:08:22 +00:00
dtiquery
ecs Rectify USE_TEX to support both of teTeX and TeXLive. 2013-05-11 17:58:55 +00:00
elmer-eio
elmer-hutiter adjust linking and comments in dependent ports after the math/atlas update; 2011-11-22 11:14:10 +00:00
elmer-matc
elmer-meshgen2d
elmergrid
elmerpost Mark as broken on recent i386-9: does not compile. 2011-08-29 04:10:04 +00:00
epte - Update to 2.0.8 2012-08-06 07:19:41 +00:00
euler Fix build with bmake 2013-05-04 22:26:47 +00:00
fastcap fix the clang build 2011-08-20 11:28:54 +00:00
fasthenry update to 3.0wr-021113 2013-03-28 01:06:02 +00:00
felt - Update to version 3.07 2012-12-01 00:00:12 +00:00
flounder - Fix build with clang 2012-12-23 19:11:12 +00:00
fvcom Add new ports science/fvcom and science/fvcom-mpi: 2013-02-20 17:30:45 +00:00
fvcom-mpi Add new ports science/fvcom and science/fvcom-mpi: 2013-02-20 17:30:45 +00:00
fvm Chase french/med upgrade. 2013-03-19 20:35:32 +00:00
g3data - update png to 1.5.10 2012-06-01 05:26:28 +00:00
gamess update to 2012/5/1 R2 version. 2013-03-05 11:43:18 +00:00
gchemutils science/openbabel: 2012-12-11 14:19:54 +00:00
gdis - Update to 0.90 2013-03-02 06:29:42 +00:00
getdp - forgot to remove a file in the last update. 2012-11-08 00:02:06 +00:00
ghemical - Convert USE_GETTEXT to USES (part 1) 2013-04-24 07:35:40 +00:00
ghmm
gnudatalanguage Finish converting the whole ports tree to USES=pkgconfig 2013-04-23 14:20:25 +00:00
gramps Convert science to new options framework 2013-04-28 22:08:22 +00:00
gromacs Finish converting the whole ports tree to USES=pkgconfig 2013-04-23 14:20:25 +00:00
gsmc - update png to 1.5.10 2012-06-01 05:26:28 +00:00
gsystem - Deprecate QT3, KDE3 and unmaintained ports depending on them. QT 3.3.8 2012-12-30 12:03:51 +00:00
gtamsanalyzer - reset MAINTAINER 2012-06-26 05:44:19 +00:00
gwyddion - Convert USE_GETTEXT to USES (part 4) 2013-04-26 10:44:28 +00:00
h5utils - update png to 1.5.10 2012-06-01 05:26:28 +00:00
harminv - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS) 2011-09-23 22:26:39 +00:00
hdf - Update to 4.2.8. 2012-12-20 05:41:13 +00:00
hdf5
hdf5-18 Convert science to new options framework 2013-04-28 22:08:22 +00:00
hdf-java Convert to new option framework 2012-12-13 10:47:44 +00:00
hs-bio - Fix breakage in the DYNAMIC-enabled ports triggered by the recent 2013-02-05 22:26:31 +00:00
InsightToolkit Readd specific EXAMPLES description because of specific comment in it 2013-04-29 05:39:52 +00:00
isaac-cfd Style: tab -> space. 2013-03-28 16:28:59 +00:00
jmol Decommissioning java 1.5 (EOLed since October 2009): 2012-12-10 13:43:43 +00:00
jstrack - update to 3.3.4 (old version isn't fetchable anymore) 2012-11-08 11:40:29 +00:00
kalzium Fix plist 2013-04-03 11:25:06 +00:00
kmovisto - Deprecate QT3, KDE3 and unmaintained ports depending on them. QT 3.3.8 2012-12-30 12:03:51 +00:00
kst - Convert USE_GETTEXT to USES (part 3) 2013-04-24 18:10:30 +00:00
kst2 - convert USE_CMAKE to USES 2013-03-22 20:06:14 +00:00
lamprop
libctl - Does not build on 8.3-i386. Does build ok on 9.1-i386. 2013-04-15 17:29:36 +00:00
libghemical - Convert USE_GETTEXT to USES (part 1) 2013-04-24 07:35:40 +00:00
libint - Remove WITH_FBSD10_FIX, is no longer needed 2011-11-09 15:26:04 +00:00
libkml Fix typos and make small modifications in COMMENT (according to Porter's 2012-08-03 15:54:35 +00:00
liblinear Convert science to new options framework 2013-04-28 22:08:22 +00:00
liboglappth This changes almost all the "gnomehack" only USE_GNOME cases to USES= pathfix. 2013-03-19 13:04:30 +00:00
libquantum
libsvm Convert science to new options framework 2013-04-28 22:08:22 +00:00
libsvm-python The vast majority of pkg-descr files had the following format when they 2011-10-24 09:11:38 +00:00
linsmith - Convert USE_ICONV=yes to USES=iconv 2013-04-27 18:25:24 +00:00
massxpert - Convert USE_ICONV=yes to USES=iconv 2013-04-27 18:25:24 +00:00
mayavi - Update *_DEPENDS on x11-toolkits/py-tkinter after _tkinter.so relocation 2013-03-02 22:32:48 +00:00
mbdyn Convert science to new options framework 2013-04-28 22:08:22 +00:00
mcstas Fix with bmake(1) 2013-05-03 08:17:33 +00:00
medit Upgrade to 2012.02.05. 2012-11-22 21:39:32 +00:00
meep - Convert USE_ICONV=yes to USES=iconv 2013-04-27 18:25:24 +00:00
mei MEI stands for Mathematical Expression Interpreter. 2012-07-07 15:15:08 +00:00
minc Update to version 1.5.1 [1] 2012-07-20 16:32:07 +00:00
minc2 Update to version 2.0.18 [1] 2012-07-20 16:33:32 +00:00
mol2ps - Update to 0.3 2013-03-02 14:54:19 +00:00
mpb adjust linking and comments in dependent ports after the math/atlas update; 2011-11-22 11:14:10 +00:00
mpqc Rectify USE_TEX to support both of teTeX and TeXLive. 2013-05-11 17:58:55 +00:00
mpqc-mpich Fix the two affected ports 2012-02-10 09:33:05 +00:00
ncs Rectify USE_TEX to support both of teTeX and TeXLive. 2013-05-11 17:58:55 +00:00
netcdf Convert science to new options framework 2013-04-28 22:08:22 +00:00
netcdf3-ftn
netcdf4 Convert science to new options framework 2013-04-28 22:08:22 +00:00
netcdf-ftn
nifticlib - Fix typos in COMMENT 2012-08-02 09:02:43 +00:00
omnetpp Convert science to new options framework 2013-04-28 22:08:22 +00:00
openbabel - convert USE_CMAKE to USES 2013-03-22 20:06:14 +00:00
ovt Decommissioning java 1.5 (EOLed since October 2009): 2012-12-10 13:43:43 +00:00
p5-Algorithm-SVMLight - Assign clsung's p5- ports to perl@ 2012-05-01 01:47:10 +00:00
p5-Chemistry-3DBuilder - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Bond-Find - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Canonicalize - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-Mopac - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-PDB - Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or 2012-06-10 18:42:48 +00:00
p5-Chemistry-File-SLN - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-SMARTS - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-SMILES - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-VRML - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-XYZ - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-FormulaPattern - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-InternalCoords - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Isotope
p5-Chemistry-MacroMol - Trim Makefile headers 2012-12-07 07:13:56 +00:00
p5-Chemistry-MidasPattern - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Mok - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Mol - Trim Makefile headers 2012-12-06 02:12:52 +00:00
p5-Chemistry-Pattern - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Reaction - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Ring - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Geo-BUFR - Update to 1.22 2013-04-30 10:27:54 +00:00
p5-Geo-Coordinates-Converter Cleanup supporting perl version 5.8 and 5.10, 2012-12-17 06:15:27 +00:00
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS Update to 0.011. 2013-01-29 08:50:49 +00:00
p5-PerlMol - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Physics-Unit - Update to 0.53 2012-05-26 07:29:57 +00:00
paje - reset MAINTAINER 2012-06-26 05:44:19 +00:00
paraview Convert science to new options framework 2013-04-28 22:08:22 +00:00
peekabot This changes almost all the "gnomehack" only USE_GNOME cases to USES= pathfix. 2013-03-19 13:04:30 +00:00
pnetcdf - Update to 1.3.1 2012-09-30 04:19:04 +00:00
psi3 - Fix all cases of 'No newline at end of file' in ports tree 2013-02-01 15:04:00 +00:00
psychopy - Update to 1.76.0 2013-03-24 14:19:01 +00:00
py-DendroPy Update to 3.12.0 2012-07-18 06:21:15 +00:00
py-h5py
py-hcluster - update png to 1.5.10 2012-06-01 05:26:28 +00:00
py-mdp - Update to 3.2 2012-08-08 21:27:15 +00:00
py-mlpy At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 2012-01-21 17:40:15 +00:00
py-netCDF4 - Update to version 1.0.4 2013-04-30 00:39:35 +00:00
py-obspy-core - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.db - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.gse2 - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.imaging - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.iris - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.mseed - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.signal - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.taup - Fix bad plist prevents packaging 2013-04-07 12:01:13 +00:00
py-obspy.wav - Trim Makefile headers 2012-10-10 06:46:07 +00:00
py-obspy.xseed - Update to 0.7.0 2012-10-10 06:25:58 +00:00
py-paida - Update *_DEPENDS on x11-toolkits/py-tkinter after _tkinter.so relocation 2013-03-02 22:32:48 +00:00
py-pydicom Fix typos and make small modifications in COMMENT (according to Porter's 2012-08-03 15:54:35 +00:00
py-scikit-learn Update to version 0.13.1. 2013-03-11 14:11:26 +00:00
py-scimath At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 2012-01-21 17:40:15 +00:00
py-scipy - update to 0.11.0 2012-10-17 06:15:16 +00:00
py-ws2300 - Update to 1.7 [1] 2012-12-09 13:19:39 +00:00
pybrain
pycdf At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 2012-01-21 17:40:15 +00:00
pynn - Update to 0.7.5 2013-03-02 05:49:40 +00:00
pyteomics - Update to 2.1.5 and [1]: 2013-05-11 07:42:20 +00:00
pyteomics.biolccc Allow to build with python3 2013-05-11 07:41:46 +00:00
qcl Remove more tags from pkg-descr files fo the form: 2011-10-24 04:17:37 +00:00
qtresistors - Convert USE_QT_VER=4 and QT_COMPONETS to USE_QT4 2012-06-06 06:44:37 +00:00
R-cran-AMORE update math/R to 2.15.3, and adjust dependent ports 2013-03-07 04:21:34 +00:00
R-cran-bayesm update math/R to 2.15.3, and adjust dependent ports 2013-03-07 04:21:34 +00:00
R-cran-DCluster update math/R to 2.15.3, and adjust dependent ports 2013-03-07 04:21:34 +00:00
R-cran-e1071 update math/R to 2.15.3, and adjust dependent ports 2013-03-07 04:21:34 +00:00
R-cran-eco update math/R to 2.15.3, and adjust dependent ports 2013-03-07 04:21:34 +00:00
R-cran-Epi update math/R to 2.15.3, and adjust dependent ports 2013-03-07 04:21:34 +00:00
R-cran-epicalc update math/R to 2.15.3, and adjust dependent ports 2013-03-07 04:21:34 +00:00
R-cran-snow - Update to 0.3-12 2013-03-27 20:52:59 +00:00
R-cran-som update math/R to 2.15.3, and adjust dependent ports 2013-03-07 04:21:34 +00:00
ruby-dcl - Update to 1.7.0. 2012-07-25 01:23:45 +00:00
ruby-gphys - Update to 1.2.2 2013-01-22 03:31:11 +00:00
ruby-netcdf - update to 0.6.6 2012-03-08 04:34:40 +00:00
rubygem-ai4r - Add patch to fix build 2013-02-26 02:34:03 +00:00
silo Convert USE_NCURSES by USES=ncurses 2013-05-06 15:34:17 +00:00
simlib
step KDE/FreeBSD team presents KDE SC 4.10.1 ports! 2013-03-27 11:55:25 +00:00
svmlight
szip - Update distinfo because distfile was rerolled upstream [1] 2012-02-04 07:44:50 +00:00
udunits - Remove unnecessary USE_PERL5 2012-05-06 09:35:33 +00:00
v_sim - Convert USE_GETTEXT to USES (part 3) 2013-04-24 18:10:30 +00:00
veusz Bump PORTREVISON after devel/py-sip and devel/qscintilla2 update. 2013-02-03 18:16:54 +00:00
vmd Fix minor nit: use the canconical FreeBSD.org form for email addresses. 2013-03-17 16:44:03 +00:00
voro++ - add new port: science/voro++ 2013-04-16 22:46:18 +00:00
x11iraf Register CONFLICTS 2012-06-11 09:52:17 +00:00
xmakemol Switch from libglut to freeglut and retire libglut. Libglut hasn't been 2012-08-04 22:52:02 +00:00
xmds Convert science to new options framework 2013-04-28 22:08:22 +00:00
Makefile - add new port: science/voro++ 2013-04-16 22:46:18 +00:00