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freebsd-ports/science
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Raphael Kubo da Costa 554e0c79c9 Update the KDE Software Compilation to 4.10.5. 
Proudly brought to you by the KDE on FreeBSD team. We're sorry to ship two
KDE updates in just a few days, but the work on 4.10.5 was very light
compared to 4.10.4 so it was ready much faster.

The release announcement can be found in [1].
[1] http://www.kde.org/announcements/announce-4.10.5.php

The biggest news for us on FreeBSD is that the Ruby bindings should work
with Ruby 1.9 now.

I will probably add a note to UPDATING later about this, but as avilla@
pointed out, the clang support we mentioned that was improved in 4.10.4
requires a rebuild of the ports that depend on kdelibs4. Most of them are
covered by this update, but those which are not part of the Software
Compilation need to be rebuilt manually to make sure the previous issues
(proper symbol visibility being the most annoying of them) are solved.
2013-07-04 23:34:32 +00:00
..
2d-rewriter Convert to USES=imake 2013-06-28 22:25:57 +00:00
2dhf
abinit Rectify USE_TEX to support both of teTeX and TeXLive. 2013-05-11 17:58:55 +00:00
afni Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
avogadro - Backout previous commit 2013-05-15 05:16:51 +00:00
bddsolve
bft Upgrade Code_Saturne to 2.0. 2012-07-07 15:15:56 +00:00
bodr
brian - Update to 1.4.0 2012-09-04 07:13:08 +00:00
buddy
cdcl Update to 5.4.7 2012-12-19 03:01:41 +00:00
cdf
cdo - Update to 1.6.0 2013-06-08 21:49:40 +00:00
cgnslib - Fix build with Tcl/Tk 8.6 2013-06-04 09:33:05 +00:00
checkmol - worked with upstream to roll versioned source distfile 2013-06-01 05:10:39 +00:00
chemical-mime-data
chemtool
chemtool-devel - Convert USE_GETTEXT to USES (part 3) 2013-04-24 18:10:30 +00:00
clhep
colt Decommissioning java 1.5 (EOLed since October 2009): 2012-12-10 13:43:43 +00:00
crf++
dcl - Update to 5.4.7 2012-12-13 02:25:38 +00:00
devisor Convert NOPORTDOCS -> PORT_OPTIONS:MDOCS. 2013-06-20 13:59:24 +00:00
dlpoly-classic Convert science to new options framework 2013-04-28 22:08:22 +00:00
dtiquery
ecs WITHOUT_NLS -> PORT_OPTIONS:MNLS 2013-06-04 14:40:29 +00:00
elmer-eio
elmer-hutiter
elmer-matc
elmer-meshgen2d
elmergrid
elmerpost
epte - Update to 2.0.8 2012-08-06 07:19:41 +00:00
euler Fix spelling LICENCE -> LICENSE. 2013-06-13 15:30:22 +00:00
fastcap
fasthenry update to 3.0wr-021113 2013-03-28 01:06:02 +00:00
felt . trim Makefile headers; 2013-06-20 12:46:30 +00:00
flounder - Fix build with clang 2012-12-23 19:11:12 +00:00
fvcom Add new ports science/fvcom and science/fvcom-mpi: 2013-02-20 17:30:45 +00:00
fvcom-mpi Add new ports science/fvcom and science/fvcom-mpi: 2013-02-20 17:30:45 +00:00
fvm Chase french/med upgrade. 2013-03-19 20:35:32 +00:00
g3data
gamess update to 2012/5/1 R2 version. 2013-03-05 11:43:18 +00:00
gchemutils Update to 0.14.2. 2013-06-27 11:42:57 +00:00
gdis - Update to 0.90 2013-03-02 06:29:42 +00:00
getdp - forgot to remove a file in the last update. 2012-11-08 00:02:06 +00:00
ghemical - Convert USE_GETTEXT to USES (part 1) 2013-04-24 07:35:40 +00:00
ghmm
gnudatalanguage Finish converting the whole ports tree to USES=pkgconfig 2013-04-23 14:20:25 +00:00
gramps gramps installs a .desktop file with a MimeType and registers Mime types 2013-06-24 22:02:02 +00:00
gromacs - Update to 4.6.2 2013-06-04 08:19:33 +00:00
gsmc
gsystem - Deprecate QT3, KDE3 and unmaintained ports depending on them. QT 3.3.8 2012-12-30 12:03:51 +00:00
gtamsanalyzer . portlint: remove whitespace before end of line; 2013-06-20 13:06:02 +00:00
gwyddion Convert to USES to update-desktop-database on package install and uninstall 2013-06-30 21:25:03 +00:00
h5utils
harminv
hdf - Update to 4.2.8. 2012-12-20 05:41:13 +00:00
hdf5
hdf5-18 Convert science to new options framework 2013-04-28 22:08:22 +00:00
hdf-java . remove shlib ABI version numbers from LIB_DEPENDS; 2013-06-20 13:25:04 +00:00
hs-bio - Update The Glorious Glasgow Haskell Compiler to version 7.6.3 2013-06-04 18:53:40 +00:00
InsightToolkit Readd specific EXAMPLES description because of specific comment in it 2013-04-29 05:39:52 +00:00
isaac-cfd . introduce optionsNG; 2013-06-20 16:19:43 +00:00
jmol Decommissioning java 1.5 (EOLed since October 2009): 2012-12-10 13:43:43 +00:00
jstrack - update to 3.3.4 (old version isn't fetchable anymore) 2012-11-08 11:40:29 +00:00
kalzium Update the KDE Software Compilation to 4.10.5. 2013-07-04 23:34:32 +00:00
kmovisto - Deprecate QT3, KDE3 and unmaintained ports depending on them. QT 3.3.8 2012-12-30 12:03:51 +00:00
kst - Convert USE_GETTEXT to USES (part 3) 2013-04-24 18:10:30 +00:00
kst2 - convert USE_CMAKE to USES 2013-03-22 20:06:14 +00:00
lamprop
libctl - Does not build on 8.3-i386. Does build ok on 9.1-i386. 2013-04-15 17:29:36 +00:00
libghemical - Convert USE_GETTEXT to USES (part 1) 2013-04-24 07:35:40 +00:00
libint
libkml Fix typos and make small modifications in COMMENT (according to Porter's 2012-08-03 15:54:35 +00:00
liblinear Convert science to new options framework 2013-04-28 22:08:22 +00:00
liboglappth This changes almost all the "gnomehack" only USE_GNOME cases to USES= pathfix. 2013-03-19 13:04:30 +00:00
libquantum
libsvm Convert science to new options framework 2013-04-28 22:08:22 +00:00
libsvm-python
linsmith - Update to 0.99.25 2013-06-17 15:31:12 +00:00
massxpert The FreeBSD x11 team proudly presents 2013-05-25 14:37:02 +00:00
mayavi . NOPORTDOCS -> PORT_OPTIONS:MDOCS; 2013-06-20 14:05:24 +00:00
mbdyn Convert science to new options framework 2013-04-28 22:08:22 +00:00
mcstas Fix with bmake(1) 2013-05-03 08:17:33 +00:00
medit Fix build with clang. 2013-06-12 20:03:25 +00:00
meep - Fix pkgconfig 2013-06-11 01:06:48 +00:00
mei MEI stands for Mathematical Expression Interpreter. 2012-07-07 15:15:08 +00:00
minc Update to version 1.5.1 [1] 2012-07-20 16:32:07 +00:00
minc2 Update to version 2.0.18 [1] 2012-07-20 16:33:32 +00:00
mol2ps - Update to version 0.4 2013-06-17 15:22:24 +00:00
mpb . add license (GPLv2); 2013-06-20 13:35:33 +00:00
mpqc Rectify USE_TEX to support both of teTeX and TeXLive. 2013-05-11 17:58:55 +00:00
mpqc-mpich
ncs Rectify USE_TEX to support both of teTeX and TeXLive. 2013-05-11 17:58:55 +00:00
netcdf Convert science to new options framework 2013-04-28 22:08:22 +00:00
netcdf3-ftn
netcdf4 Convert science to new options framework 2013-04-28 22:08:22 +00:00
netcdf-ftn
nifticlib - Fix typos in COMMENT 2012-08-02 09:02:43 +00:00
omnetpp Convert science to new options framework 2013-04-28 22:08:22 +00:00
openbabel - convert USE_CMAKE to USES 2013-03-22 20:06:14 +00:00
ovt Decommissioning java 1.5 (EOLed since October 2009): 2012-12-10 13:43:43 +00:00
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Bond-Find - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Canonicalize - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-Mopac - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-SMARTS - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-SMILES - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-VRML - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-XYZ - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-FormulaPattern - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-InternalCoords - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Isotope
p5-Chemistry-MacroMol - Trim Makefile headers 2012-12-07 07:13:56 +00:00
p5-Chemistry-MidasPattern - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Mok - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Mol - Trim Makefile headers 2012-12-06 02:12:52 +00:00
p5-Chemistry-Pattern - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Reaction - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Ring - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Geo-BUFR - Update to 1.23 2013-05-15 00:29:31 +00:00
p5-Geo-Coordinates-Converter Cleanup supporting perl version 5.8 and 5.10, 2012-12-17 06:15:27 +00:00
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS Update to 0.011. 2013-01-29 08:50:49 +00:00
p5-PerlMol - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Physics-Unit
paje . portlint: use tab (not space) to make indentation; 2013-06-20 13:43:03 +00:00
paraview Convert science to new options framework 2013-04-28 22:08:22 +00:00
peekabot This changes almost all the "gnomehack" only USE_GNOME cases to USES= pathfix. 2013-03-19 13:04:30 +00:00
pnetcdf - Update to 1.3.1 2012-09-30 04:19:04 +00:00
psi3 - Fix all cases of 'No newline at end of file' in ports tree 2013-02-01 15:04:00 +00:00
psychopy - Update to 1.77.00 2013-05-16 13:04:09 +00:00
py-coards Clean up. 2013-06-16 08:29:46 +00:00
py-DendroPy Update to 3.12.0 2012-07-18 06:21:15 +00:00
py-h5py
py-hcluster
py-mdp - Update to 3.2 2012-08-08 21:27:15 +00:00
py-mlpy
py-netCDF4 - Update to version 1.0.4 2013-04-30 00:39:35 +00:00
py-obspy - Update to 0.8.3 2013-05-17 14:05:33 +00:00
py-paida - Update *_DEPENDS on x11-toolkits/py-tkinter after _tkinter.so relocation 2013-03-02 22:32:48 +00:00
py-pydicom Fix typos and make small modifications in COMMENT (according to Porter's 2012-08-03 15:54:35 +00:00
py-scikit-learn Update to version 0.13.1. 2013-03-11 14:11:26 +00:00
py-scimath
py-scipy NOPORTDOCS -> PORT_OPTIONS:MDOCS. 2013-06-20 13:40:22 +00:00
py-ws2300 - Update to 1.7 [1] 2012-12-09 13:19:39 +00:00
pybrain
pycdf
pynn - Update to 0.7.5 2013-03-02 05:49:40 +00:00
pyteomics - Update to 2.1.5 and [1]: 2013-05-11 07:42:20 +00:00
pyteomics.biolccc Allow to build with python3 2013-05-11 07:41:46 +00:00
qcl
qtresistors
R-cran-AMORE Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-bayesm Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-DCluster Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-e1071 Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-eco Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-Epi Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-epicalc Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-snow Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-som Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
ruby-dcl - Update to 1.7.0. 2012-07-25 01:23:45 +00:00
ruby-gphys - Update to 1.2.2 2013-01-22 03:31:11 +00:00
ruby-netcdf
rubygem-ai4r - Add patch to fix build 2013-02-26 02:34:03 +00:00
silo Convert USE_NCURSES by USES=ncurses 2013-05-06 15:34:17 +00:00
simlib
step Update the KDE Software Compilation to 4.10.5. 2013-07-04 23:34:32 +00:00
svmlight
szip . NOPORTDOCS -> PORT_OPTIONS:MDOCS; 2013-06-20 13:01:27 +00:00
udunits
v_sim - Correct DOCS handling 2013-06-14 12:00:22 +00:00
veusz - Update to 1.17.1 2013-06-19 13:53:12 +00:00
vmd Fix minor nit: use the canconical FreeBSD.org form for email addresses. 2013-03-17 16:44:03 +00:00
voro++ - add new port: science/voro++ 2013-04-16 22:46:18 +00:00
x11iraf
xmakemol Switch from libglut to freeglut and retire libglut. Libglut hasn't been 2012-08-04 22:52:02 +00:00
xmds Convert science to new options framework 2013-04-28 22:08:22 +00:00
Makefile Add new port science/py-coards: 2013-06-15 19:08:39 +00:00