mirror of
https://git.FreeBSD.org/ports.git
synced 2024-12-18 03:46:03 +00:00
54 lines
1.4 KiB
Makefile
54 lines
1.4 KiB
Makefile
# Created by: barnhart@genetics.wustl.edu
|
|
|
|
PORTNAME= hmmer
|
|
PORTVERSION= 3.3
|
|
CATEGORIES= biology
|
|
MASTER_SITES= http://eddylab.org/software/hmmer/
|
|
|
|
MAINTAINER= mzaki@e-mail.ne.jp
|
|
COMMENT= Profile hidden Markov models for biological sequence analysis
|
|
|
|
LICENSE= BSD3CLAUSE
|
|
LICENSE_FILE= ${WRKSRC}/LICENSE
|
|
|
|
ONLY_FOR_ARCHS= amd64 i386 powerpc powerpc64
|
|
ONLY_FOR_ARCHS_REASON= requires SSE2 or AltiVec instructions
|
|
|
|
USES= compiler:c11 gmake perl5 python:3.5+,test shebangfix
|
|
|
|
GNU_CONFIGURE= yes
|
|
MAKE_ARGS= V=1
|
|
|
|
TEST_TARGET= check
|
|
USE_PERL5= test
|
|
SHEBANG_GLOB= *.pl *.py
|
|
SHEBANG_FILES= easel/devkit/*
|
|
|
|
OPTIONS_DEFINE= DOCS EXAMPLES TEST
|
|
|
|
DOCFILES= Userguide.pdf
|
|
EXAMPLES= 7LESS_DROME HBB_HUMAN MADE1.hmm MADE1.sto \
|
|
Pkinase.hmm Pkinase.sto dna_target.fa fn3.hmm fn3.sto \
|
|
globins4.hmm globins4.sto globins45.fa
|
|
|
|
TEST_VARS= use_perl5=build
|
|
TEST_BUILD_DEPENDS= ${PYTHON_VERSION}:lang/python${PYTHON_SUFFIX}
|
|
|
|
post-build-TEST-on: pre-test do-test
|
|
|
|
pre-test:
|
|
${FIND} ${WRKSRC} -type f \( -name Makefile -or -name sqc \) -exec ${GREP} -q 'python3 ' {} \; -print | ${XARGS} ${SED} -i.bak 's/python3 /${PYTHON_VERSION} /'
|
|
|
|
post-install:
|
|
@${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/*
|
|
|
|
post-install-DOCS-on:
|
|
@${MKDIR} ${STAGEDIR}${DOCSDIR}
|
|
${INSTALL_DATA} ${DOCFILES:S,^,${WRKSRC}/,} ${STAGEDIR}${DOCSDIR}
|
|
|
|
post-install-EXAMPLES-on:
|
|
@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
|
|
${INSTALL_DATA} ${EXAMPLES:S,^,${WRKSRC}/tutorial/,} ${STAGEDIR}${EXAMPLESDIR}
|
|
|
|
.include <bsd.port.mk>
|