mirror of
https://git.FreeBSD.org/ports.git
synced 2025-01-08 06:48:28 +00:00
268 lines
12 KiB
Plaintext
268 lines
12 KiB
Plaintext
libdata/pkgconfig/libsbml.pc
|
|
include/sbml/Compartment.h
|
|
include/sbml/CompartmentType.h
|
|
include/sbml/Constraint.h
|
|
include/sbml/Delay.h
|
|
include/sbml/Event.h
|
|
include/sbml/EventAssignment.h
|
|
include/sbml/FunctionDefinition.h
|
|
include/sbml/InitialAssignment.h
|
|
include/sbml/KineticLaw.h
|
|
include/sbml/ListOf.h
|
|
include/sbml/LocalParameter.h
|
|
include/sbml/Model.h
|
|
include/sbml/Parameter.h
|
|
include/sbml/Priority.h
|
|
include/sbml/Reaction.h
|
|
include/sbml/Rule.h
|
|
include/sbml/SBMLDocument.h
|
|
include/sbml/SBMLError.h
|
|
include/sbml/SBMLErrorLog.h
|
|
include/sbml/SBMLErrorTable.h
|
|
include/sbml/SBMLNamespaces.h
|
|
include/sbml/SBMLReader.h
|
|
include/sbml/SBMLTransforms.h
|
|
include/sbml/SBMLTypeCodes.h
|
|
include/sbml/SBMLTypes.h
|
|
include/sbml/SBMLVisitor.h
|
|
include/sbml/SBMLWriter.h
|
|
include/sbml/SBO.h
|
|
include/sbml/SBase.h
|
|
include/sbml/Species.h
|
|
include/sbml/SpeciesReference.h
|
|
include/sbml/SpeciesType.h
|
|
include/sbml/StoichiometryMath.h
|
|
include/sbml/SyntaxChecker.h
|
|
include/sbml/Trigger.h
|
|
include/sbml/Unit.h
|
|
include/sbml/UnitDefinition.h
|
|
include/sbml/UnitKind.h
|
|
include/sbml/annotation/CVTerm.h
|
|
include/sbml/annotation/ModelHistory.h
|
|
include/sbml/annotation/RDFAnnotation.h
|
|
include/sbml/common/common.h
|
|
include/sbml/common/extern.h
|
|
include/sbml/common/libsbml-config-unix.h
|
|
include/sbml/common/libsbml-config-win.h
|
|
include/sbml/common/libsbml-config.h
|
|
include/sbml/common/libsbml-namespace.h
|
|
include/sbml/common/libsbml-version.h
|
|
include/sbml/common/operationReturnValues.h
|
|
include/sbml/common/sbmlfwd.h
|
|
include/sbml/compress/CompressCommon.h
|
|
include/sbml/compress/InputDecompressor.h
|
|
include/sbml/compress/OutputCompressor.h
|
|
include/sbml/compress/bzfstream.h
|
|
include/sbml/compress/crypt.h
|
|
include/sbml/compress/ioapi.h
|
|
include/sbml/compress/iowin32.h
|
|
include/sbml/compress/unzip.h
|
|
include/sbml/compress/zfstream.h
|
|
include/sbml/compress/zip.h
|
|
include/sbml/compress/zipfstream.h
|
|
include/sbml/math/ASTNode.h
|
|
include/sbml/math/FormulaFormatter.h
|
|
include/sbml/math/FormulaParser.h
|
|
include/sbml/math/FormulaTokenizer.h
|
|
include/sbml/math/MathML.h
|
|
include/sbml/units/FormulaUnitsData.h
|
|
include/sbml/units/UnitFormulaFormatter.h
|
|
include/sbml/units/UnitKindList.h
|
|
include/sbml/util/List.h
|
|
include/sbml/util/Stack.h
|
|
include/sbml/util/StringBuffer.h
|
|
include/sbml/util/memory.h
|
|
include/sbml/util/util.h
|
|
include/sbml/validator/ConsistencyValidator.h
|
|
include/sbml/validator/ConstraintMacros.h
|
|
include/sbml/validator/IdentifierConsistencyValidator.h
|
|
include/sbml/validator/InternalConsistencyValidator.h
|
|
include/sbml/validator/L1CompatibilityValidator.h
|
|
include/sbml/validator/L2v1CompatibilityValidator.h
|
|
include/sbml/validator/L2v2CompatibilityValidator.h
|
|
include/sbml/validator/L2v3CompatibilityValidator.h
|
|
include/sbml/validator/L2v4CompatibilityValidator.h
|
|
include/sbml/validator/L3v1CompatibilityValidator.h
|
|
include/sbml/validator/MathMLConsistencyValidator.h
|
|
include/sbml/validator/ModelingPracticeValidator.h
|
|
include/sbml/validator/OverdeterminedValidator.h
|
|
include/sbml/validator/SBOConsistencyValidator.h
|
|
include/sbml/validator/UnitConsistencyValidator.h
|
|
include/sbml/validator/VConstraint.h
|
|
include/sbml/validator/Validator.h
|
|
include/sbml/validator/constraints/IdBase.h
|
|
include/sbml/validator/constraints/IdList.h
|
|
include/sbml/validator/constraints/MathMLBase.h
|
|
include/sbml/validator/constraints/OverDeterminedCheck.h
|
|
include/sbml/validator/constraints/UniqueIdBase.h
|
|
include/sbml/validator/constraints/UniqueMetaId.h
|
|
include/sbml/validator/constraints/UnitsBase.h
|
|
include/sbml/xml/LibXMLAttributes.h
|
|
include/sbml/xml/LibXMLHandler.h
|
|
include/sbml/xml/LibXMLNamespaces.h
|
|
include/sbml/xml/LibXMLParser.h
|
|
include/sbml/xml/LibXMLTranscode.h
|
|
include/sbml/xml/XMLAttributes.h
|
|
include/sbml/xml/XMLBuffer.h
|
|
include/sbml/xml/XMLError.h
|
|
include/sbml/xml/XMLErrorLog.h
|
|
include/sbml/xml/XMLExtern.h
|
|
include/sbml/xml/XMLFileBuffer.h
|
|
include/sbml/xml/XMLHandler.h
|
|
include/sbml/xml/XMLInputStream.h
|
|
include/sbml/xml/XMLMemoryBuffer.h
|
|
include/sbml/xml/XMLNamespaces.h
|
|
include/sbml/xml/XMLNode.h
|
|
include/sbml/xml/XMLOutputStream.h
|
|
include/sbml/xml/XMLParser.h
|
|
include/sbml/xml/XMLToken.h
|
|
include/sbml/xml/XMLTokenizer.h
|
|
include/sbml/xml/XMLTriple.h
|
|
lib/libsbml.so.6
|
|
lib/libsbml.so
|
|
lib/libsbml.la
|
|
lib/libsbml.a
|
|
@dirrm include/sbml/annotation
|
|
@dirrm include/sbml/common
|
|
@dirrm include/sbml/compress
|
|
@dirrm include/sbml/math
|
|
@dirrm include/sbml/units
|
|
@dirrm include/sbml/util
|
|
@dirrm include/sbml/validator/constraints
|
|
@dirrm include/sbml/validator
|
|
@dirrm include/sbml/xml
|
|
@dirrm include/sbml/
|
|
%%WITH_PYTHON%%%%PYTHON_SITELIBDIR%%/libsbml/_libsbml.so
|
|
%%WITH_PYTHON%%%%PYTHON_SITELIBDIR%%/libsbml/libsbml.py
|
|
%%WITH_PYTHON%%%%PYTHON_SITELIBDIR%%/libsbml/libsbml.pyc
|
|
%%WITH_PYTHON%%%%PYTHON_SITELIBDIR%%/libsbml.pth
|
|
%%WITH_PYTHON%%%%PYTHON_SITELIBDIR%%/%%SBML_EGGINFO%%
|
|
%%WITH_PYTHON%%@dirrm %%PYTHON_SITELIBDIR%%/libsbml
|
|
%%WITH_RUBY%%%%RUBY_SITEARCHLIBDIR%%/libSBML.so
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/README.txt
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/FormulaGraphvizFormatter.h
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/Makefile
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/Makefile.in
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/convertSBML.c
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/drawMath.c
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/echoSBML.c
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/evaluateMath.c
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/printMath.c
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/printSBML.c
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/readSBML.c
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/translateMath.c
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/util.c
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/util.h
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/validateSBML.c
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/Makefile
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/Makefile.in
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/addCVTerms.cpp
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/addingEvidenceCodes_1.cpp
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/addingEvidenceCodes_2.cpp
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/addModelHistory.cpp
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/appendAnnotation.cpp
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/convertSBML.cpp
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/createExampleSBML.cpp
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/echoSBML.cpp
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/printAnnotation.cpp
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/printMath.cpp
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/printNotes.cpp
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/printSBML.cpp
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/printUnits.cpp
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/readSBML.cpp
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/translateMath.cpp
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/unsetAnnotation.cpp
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/unsetNotes.cpp
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/util.c
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/util.h
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/validateSBML.cpp
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/Makefile
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/Makefile.in
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/echoSBML.cs
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/validateSBML.cs
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/Makefile
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/Makefile.in
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/README.txt
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/addCVTerms.java
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/addModelHistory.java
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/appendAnnotation.java
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/convertSBML.java
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/echoSBML.java
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/evaluateMath.java
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/printAnnotation.java
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/printMath.java
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/printNotes.java
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/printSBML.java
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/printUnits.java
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/readSBML.java
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/translateMath.java
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/unsetAnnotation.java
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/unsetNotes.java
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/validateSBML.java
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/layout/Makefile.in
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/layout/example1.cpp
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/layout/example1.java
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/layout/example1.py
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/layout/example2.cpp
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/layout/example3.cpp
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/layout/layout2svg.xsl
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/convertSBML.pl
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/evaluateMath.pl
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/extractReactionInfo.pl
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/extractReactions.pl
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/printMath.pl
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/printSBML.pl
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/readSBML.pl
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/translateMath.pl
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/validateSBML.pl
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/echoSBML.py
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/validateSBML.py
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/convertSBML.rb
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/echoSBML.rb
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/printMath.rb
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/validateSBML.rb
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/README.txt
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/README.txt
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/algebraicrules.xml
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/assignmentrules.xml
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/boundarycondition.xml
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/delay.xml
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/dimerization.xml
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/enzymekinetics.xml
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/events.xml
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/functiondef.xml
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/multicomp.xml
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/overdetermined.xml
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/twodimensional.xml
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/units.xml
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/algebraicrules.xml
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/assignmentrules.xml
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/boundarycondition.xml
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/conversionfactor1.xml
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/conversionfactor2.xml
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/delay.xml
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/dimerization.xml
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/enzymekinetics.xml
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/events.xml
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/fullydeterminedevent.xml
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/functiondef.xml
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/membrane.xml
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/multicomp.xml
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/overdetermined.xml
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/README.txt
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/twoalgebraicrules.xml
|
|
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/twodimensional.xml
|
|
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/c
|
|
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/c++
|
|
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/csharp
|
|
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/java
|
|
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/layout
|
|
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/perl
|
|
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/python
|
|
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/ruby
|
|
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/sample-models/from-spec/level-3
|
|
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/sample-models/from-spec/level-2
|
|
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/sample-models/from-spec
|
|
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/sample-models
|
|
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%
|